Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30338
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 287 9e-78
02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182... 58 8e-09
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819... 29 4.0
12_01_0647 - 5485100-5487028 28 9.3
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 28 9.3
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 28 9.3
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 28 9.3
01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052 28 9.3
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 287 bits (703), Expect = 9e-78
Identities = 133/226 (58%), Positives = 164/226 (72%), Gaps = 1/226 (0%)
Frame = +2
Query: 83 KAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXX 262
K + S +P S A+ L+ AS S T +YTV+DH +D
Sbjct: 17 KGSSSSAPVSAAARLFST----ASVVPSIPRPQLIRATSSYTVVDHSYDAVVVGAGGAGL 72
Query: 263 XXXXXXVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLG 442
+ GF TA +TKLFPTRSHTVAAQGGINAALGNM ED W WHMYDTVKGSDWLG
Sbjct: 73 RAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 132
Query: 443 DQDAIHYMTKEAPHAVIELDNYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVAD 622
DQD+I YM +EAP AVIEL+NYG+PFSRT +GKIYQRAFGGQSL FGKGGQA+RC AD
Sbjct: 133 DQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAAD 192
Query: 623 RTGHSLLHTLYGQSLRYDCEYFIEYFALDLLME-DGVCKGCIAINL 757
RTGH++LHTLYGQ+++++ ++F+EYFALDL+M+ +G C+G IA+N+
Sbjct: 193 RTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSEGTCQGVIALNM 238
>02_01_0273 +
1822370-1822503,1822913-1823258,1823393-1823635,
1824212-1824268,1824407-1824487,1824725-1824786,
1824990-1826004
Length = 645
Score = 58.0 bits (134), Expect = 8e-09
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Frame = +2
Query: 302 AVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAP 481
A++TK P S+T AQGG++A L DS HM DT+ +L D++ + + E P
Sbjct: 110 AIITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDEETVRVVCTEGP 167
Query: 482 HAVIELDNYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQ 661
V EL G F +G+++ GG S +R AD TG + L Q
Sbjct: 168 ERVKELIAMGASFDHGEDGRLHLAREGGHS--------HNRIVHSADMTGREIERALL-Q 218
Query: 662 SLRYD--CEYFIEYFALDLL 715
++ D F +FA+DLL
Sbjct: 219 AVDNDDNISLFGHHFAIDLL 238
>07_01_1111 +
10279778-10280065,10280265-10280340,10280734-10281944,
10283779-10284138
Length = 644
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +1
Query: 628 RALPPSHAVRPITPLRLRILHR------VLRSRFANGRRSLQG 738
R P RP+TPLR +I HR VLR R G R++ G
Sbjct: 83 RCAPRVTRCRPLTPLRRKIRHRFEQKLVVLRGRKGEGFRAILG 125
>12_01_0647 - 5485100-5487028
Length = 642
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 344 AAQGGINAALGNMEEDSWLWHMYDTVKG-SDWLGDQDAIHYMTKEAPHAVIELDNY 508
A Q G +LG++ D WLW++ D ++ D + + + K V EL +Y
Sbjct: 60 ANQSGETRSLGDL--DVWLWNLRDAIEELEDAIDEHEYYKLREKAKEQEVCELGSY 113
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 389 DSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 502
D WLW D V+G++ + D+ + + +EA +EL+
Sbjct: 369 DKWLWQFRDAVEGAEDVLDEIDYYKLEEEAGVHNLELE 406
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +2
Query: 326 TRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 502
T +H V G NA + LW ++G WL D+ + + P+ V+ D
Sbjct: 74 TLAHIVFVIGASNATWAKRRVYTGLWWRPGAMRGHVWLDDEPSGQWRPSWPPYRVLRPD 132
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 630 PVLSATAQHL*ACPPFPNLRDCPP 559
P + A Q+L +CPP PN PP
Sbjct: 414 PEIEAEVQYLASCPPLPNKFPPPP 437
>01_05_0571 + 23353319-23354293,23354431-23354574,23354684-23355052
Length = 495
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +3
Query: 336 ILLLHRVELMLLWETWRKTVGSGICMTQLKVPTGLEIRM 452
+++ R++ ++LW+T+ G C T++K+ E+R+
Sbjct: 268 LVVAPRLDRLILWKTFMGFPGEIFCRTRVKIGYATELRV 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,890,252
Number of Sequences: 37544
Number of extensions: 447589
Number of successful extensions: 1171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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