Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30338
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19704| Best HMM Match : FAD_binding_2 (HMM E-Value=0.48)           103   2e-22
SB_25879| Best HMM Match : WAP (HMM E-Value=1.8)                       29   5.4  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     29   5.4  
SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.5  
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)               28   9.5  
SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)                 28   9.5  

>SB_19704| Best HMM Match : FAD_binding_2 (HMM E-Value=0.48)
          Length = 190

 Score =  103 bits (246), Expect = 2e-22
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +2

Query: 338 TVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 508
           T   +GGINAALGNME D W WHMYDTVKGSDWLGDQDAIHYMT+EAP AVIE   Y
Sbjct: 46  TSKTEGGINAALGNMEPDDWRWHMYDTVKGSDWLGDQDAIHYMTEEAPKAVIESLRY 102



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 659 QSLRYDCEYFIEYFALDLLMEDGVCKGCIAINL 757
           +SLRYDCEYF+EYFALDLLM+ G C G IA+ L
Sbjct: 98  ESLRYDCEYFVEYFALDLLMDKGKCVGVIALCL 130


>SB_25879| Best HMM Match : WAP (HMM E-Value=1.8)
          Length = 260

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 346 CTGWN*CC-FGKHGGRQL 396
           CTGWN CC FGK  G ++
Sbjct: 191 CTGWNQCCLFGKRCGLKI 208


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 383 EEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 508
           E DSWL      V  SD+  D+D+   M K+    + +L+ Y
Sbjct: 783 EADSWLMEKEPVVTSSDYGKDEDSAQAMLKKHEAIMSDLEAY 824


>SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 490 NRTGQLRNAILPHPGGKDLPEGLRRTVSQVRKGRTSS*MLRRS*QNRALPPSHAV 654
           N     RN+I P+P  +   +G + + S VRK  +S+ ++  S  +++  PS  V
Sbjct: 287 NSISSSRNSIAPYPYSQSGTKGYQSSQSGVRKSASSNSLVSLSGNDKSESPSTQV 341


>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 62  SIMSTLMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHD 229
           +I   L++   +  P  +   +    +VA      +D+S+T N     T++ HKHD
Sbjct: 344 TIQVKLLQVPNAARPGLVPEDITTGSNVAIVEVRDRDSSLTVNSVVDVTLLHHKHD 399


>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
          Length = 882

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 420 TVSYICQSQLSSSMFPKAALIPPCAATVCD 331
           T   I +S + S     A + PPC +TVCD
Sbjct: 288 TAPEIVESTIPSDKHDLALVRPPCGSTVCD 317


>SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)
          Length = 716

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 26  IKNTVLWVRTESSIMSTLMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTN 190
           +KNT+  ++ +S +    M AA S  PAS    +Y N       A  +D + T N
Sbjct: 342 VKNTICTLKNDSDLKLPQMIAAFSNYPASAVQDVYDN---CPPKAKRRDKTTTKN 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,331,891
Number of Sequences: 59808
Number of extensions: 492458
Number of successful extensions: 1092
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)