Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30338
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...   297   5e-81
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...   294   4e-80
AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical ...   289   2e-78
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    32   0.51 
AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    29   4.7  

>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score =  297 bits (729), Expect = 5e-81
 Identities = 138/205 (67%), Positives = 156/205 (76%)
 Frame = +2

Query: 143 VAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLF 322
           V+ S A   DA  +      Y V+DH +D                  +EG KTAV+TKLF
Sbjct: 18  VSLSAANHSDAKRSD--IAQYKVVDHAYDAVVVGAGGAGLRAAMGLAEEGLKTAVITKLF 75

Query: 323 PTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 502
           PTRSHTVAAQGGINAALGNM  D+W WH YDTVKGSDWLGDQDAIHYMT+EA  AVIEL+
Sbjct: 76  PTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELE 135

Query: 503 NYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCE 682
           NYGMPFSRT +GKIYQRAFGGQS  FG+GGQAHR C VADRTGHSLLHTLYG SL+Y+C 
Sbjct: 136 NYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQYNCN 195

Query: 683 YFIEYFALDLLMEDGVCKGCIAINL 757
           YF+EYFALDL+ME+GVC G IA++L
Sbjct: 196 YFVEYFALDLIMENGVCVGVIAMDL 220


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score =  294 bits (722), Expect = 4e-80
 Identities = 137/205 (66%), Positives = 155/205 (75%)
 Frame = +2

Query: 143 VAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLF 322
           V+ S A   DA  +      Y V+DH +D                  + G KTAV+TKLF
Sbjct: 18  VSLSAANHSDAKRSD--IAQYKVVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLF 75

Query: 323 PTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 502
           PTRSHTVAAQGGINAALGNM  D+W WH YDTVKGSDWLGDQDAIHYMT+EA  AVIEL+
Sbjct: 76  PTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELE 135

Query: 503 NYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCE 682
           NYGMPFSRT +GKIYQRAFGGQS  FG+GGQAHR C VADRTGHSLLHTLYG SL+Y+C 
Sbjct: 136 NYGMPFSRTTDGKIYQRAFGGQSNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQYNCN 195

Query: 683 YFIEYFALDLLMEDGVCKGCIAINL 757
           YF+EYFALDL+ME+GVC G IA++L
Sbjct: 196 YFVEYFALDLIMENGVCVGVIAMDL 220


>AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical
           protein C34B2.7 protein.
          Length = 640

 Score =  289 bits (708), Expect = 2e-78
 Identities = 131/197 (66%), Positives = 150/197 (76%)
 Frame = +2

Query: 167 KDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLFPTRSHTVA 346
           K  S TTN    + V+DH  D                  + G KTAV+TKLFPTRSHTVA
Sbjct: 21  KQVSATTN----FDVVDHTFDAVVVGAGGAGLRAAMGLSEGGMKTAVITKLFPTRSHTVA 76

Query: 347 AQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYGMPFSR 526
           AQGG+NAALGNM  D+W WH YDTVKGSDWLGDQDAIHYMT+EA  A+IEL+NYGMPFSR
Sbjct: 77  AQGGVNAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAIIELENYGMPFSR 136

Query: 527 TPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCEYFIEYFAL 706
           T +GKIYQRAFGGQS  FG+GGQAHR C VADRTGHSLLHTLYG SL+YDC YF+EYFAL
Sbjct: 137 TTDGKIYQRAFGGQSNDFGRGGQAHRTCCVADRTGHSLLHTLYGASLQYDCNYFVEYFAL 196

Query: 707 DLLMEDGVCKGCIAINL 757
           DL+M+ G C G +A+++
Sbjct: 197 DLIMDKGKCIGVVALDI 213


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 431 DW-LGDQDAIHYMTKEAPHAVIELDNYGM 514
           DW  GDQ+A+H    +  HA+ +L+NY +
Sbjct: 108 DWQFGDQNALHAAVTQGAHAMTQLENYAV 136


>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 201 ALVIFVVTEASLEVAPEAAT*IFLYKYDASDAGLRETAAFINV 73
           + +  + T  + +++  AAT  F YK +ASD   R+  A+I++
Sbjct: 508 SFIASIPTSLTKKISNSAATDRFSYKIEASDGNGRKLTAYISI 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,022
Number of Sequences: 27780
Number of extensions: 362073
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)