Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30338
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66760.1 68418.m08415 succinate dehydrogenase [ubiquinone] fl... 292 2e-79
At2g18450.1 68415.m02147 succinate dehydrogenase [ubiquinone] fl... 279 1e-75
At5g14760.1 68418.m01732 L-aspartate oxidase family protein simi... 58 8e-09
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c... 31 0.83
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c... 31 0.83
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 29 3.4
At3g19280.1 68416.m02445 glycoprotein 3-alpha-L-fucosyltransfera... 28 7.7
>At5g66760.1 68418.m08415 succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial / flavoprotein
subunit of complex II identical to SP|O82663 Succinate
dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial (EC 1.3.5.1) (FP) (Flavoprotein subunit of
complex II) {Arabidopsis thaliana}
Length = 634
Score = 292 bits (716), Expect = 2e-79
Identities = 136/221 (61%), Positives = 166/221 (75%), Gaps = 1/221 (0%)
Frame = +2
Query: 98 RSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXX 277
R+PAS S L+ V+ S + ++ +T+ +YT++DH +D
Sbjct: 10 RAPASKTSSLFDG--VSGSRFSRFFSTGSTDTRSSYTIVDHTYDAVVVGAGGAGLRAAIG 67
Query: 278 XVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAI 457
+ GF TA +TKLFPTRSHTVAAQGGINAALGNM ED W WHMYDTVKGSDWLGDQDAI
Sbjct: 68 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAI 127
Query: 458 HYMTKEAPHAVIELDNYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHS 637
YM +EAP AVIEL+NYG+PFSRT EGKIYQRAFGGQSL FGKGGQA+RC ADRTGH+
Sbjct: 128 QYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHA 187
Query: 638 LLHTLYGQSLRYDCEYFIEYFALDLLM-EDGVCKGCIAINL 757
LLHTLYGQ+++++ ++F+EYFALDLLM DG C+G IA+N+
Sbjct: 188 LLHTLYGQAMKHNTQFFVEYFALDLLMASDGSCQGVIALNM 228
>At2g18450.1 68415.m02147 succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial, putative /
flavoprotein subunit of complex II, putative strong
similarity to SP|O82663 Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (EC
1.3.5.1) (FP) (Flavoprotein subunit of complex II)
{Arabidopsis thaliana}
Length = 632
Score = 279 bits (684), Expect = 1e-75
Identities = 123/187 (65%), Positives = 148/187 (79%), Gaps = 1/187 (0%)
Frame = +2
Query: 200 AYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGN 379
+YT++DH +D + GF TA +TKLFPTRSHTVAAQGGINAALGN
Sbjct: 40 SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 99
Query: 380 MEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYGMPFSRTPEGKIYQRAF 559
M D W WHMYDTVKGSDWLGDQDAI YM +EAP AVIEL+NYG+PFSRT +GKIYQRAF
Sbjct: 100 MSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAF 159
Query: 560 GGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCEYFIEYFALDLLM-EDGVCK 736
GGQSL+FG GGQA+RC ADRTGH+LLHTLYGQ+++++ ++F+EYFALDL+M DG C+
Sbjct: 160 GGQSLEFGIGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQ 219
Query: 737 GCIAINL 757
G IA+N+
Sbjct: 220 GVIALNM 226
>At5g14760.1 68418.m01732 L-aspartate oxidase family protein similar
to L-aspartate oxidase, Escherichia coli [SP|P10902];
contains Pfam profiles PF00890 FAD binding domain,
PF02910 Fumarate reductase/succinate dehydrogenase
flavoprotein C-terminal domain
Length = 651
Score = 57.6 bits (133), Expect = 8e-09
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 6/158 (3%)
Frame = +2
Query: 302 AVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAP 481
AV+TK P S+T AQGG++A L + DS HM DT+ L D++ + + E P
Sbjct: 110 AVITKDEPHESNTNYAQGGVSAVLCPL--DSVESHMRDTMVAGAHLCDEETVRVVCTEGP 167
Query: 482 HAVIELDNYGMPFSRTPEGKIYQRAFGGQSLKFGKGGQAH-RCCAVADRTGHSLLHTLYG 658
+ EL G F +G ++ +GG +H R AD TG + L
Sbjct: 168 ERIRELIAMGASFDHGEDGNLHLAR---------EGGHSHCRIVHAADMTGREIERALLE 218
Query: 659 QSLR-YDCEYFIEYFALDLL-MEDG---VCKGCIAINL 757
L + F +FA+DLL +DG VC G +N+
Sbjct: 219 AVLNDPNISVFKHHFAIDLLTSQDGLNTVCHGVDTLNI 256
>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
Glycerol-3-phosphate acyltransferase, chloroplast
precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
thaliana}; contains Pfam profile PF01553:
Acyltransferase
Length = 459
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Frame = +2
Query: 35 TVLWVRTESSIMSTLMKAA-VSRSPASLAS---YLYRNIH--VAASGATSKDASVTTNMT 196
T L R+E ++S + K A R PA++A+ LY N V +SGA+ D +V +NM+
Sbjct: 97 TFLDARSEQDLLSGIKKEAEAGRLPANVAAGMEELYWNYKNAVLSSGASRADETVVSNMS 156
Query: 197 KAY 205
A+
Sbjct: 157 VAF 159
>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
Glycerol-3-phosphate acyltransferase, chloroplast
precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
thaliana}; contains Pfam profile PF01553:
Acyltransferase
Length = 459
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Frame = +2
Query: 35 TVLWVRTESSIMSTLMKAA-VSRSPASLAS---YLYRNIH--VAASGATSKDASVTTNMT 196
T L R+E ++S + K A R PA++A+ LY N V +SGA+ D +V +NM+
Sbjct: 97 TFLDARSEQDLLSGIKKEAEAGRLPANVAAGMEELYWNYKNAVLSSGASRADETVVSNMS 156
Query: 197 KAY 205
A+
Sbjct: 157 VAF 159
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 529 GAGEWHSVVVQFDYCMRRFFSHVVNGILISKPVGTFNCV 413
G+GE ++ D C R F + I++ P+GT+ CV
Sbjct: 71 GSGEGDDELLLCDKCDRGFHMKCLRPIVVRVPIGTWLCV 109
>At3g19280.1 68416.m02445 glycoprotein 3-alpha-L-fucosyltransferase
A / FucTA / core alpha-(1,3)-fucosyltransferase (FUT11)
identical to Glycoprotein 3-alpha-L-fucosyltransferase A
(Core alpha-(1,3)-fucosyltransferase)(Fuc-T C3) (FucTA)
(FucT1) (AtFUT11)(SP:Q9LJK1) from [Arabidopsis
thaliana]; contains Pfam profile PF00852: Fucosyl
transferase; identical to cDNA
alpha1,3-fucosyltransferase (FucTA) GI:13992482
Length = 501
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 493 DYCMRRFFSHVVNGILISKPVGTFNCVIHMPEPTVFLHVSQ 371
DY +FF +V G + VG N P P FLH+ Q
Sbjct: 276 DYVTEKFFQSLVAGS-VPVVVGAPNIEEFAPSPDSFLHIKQ 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,947
Number of Sequences: 28952
Number of extensions: 336694
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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