Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30337
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 36 0.029
07_01_0161 + 1132505-1132704,1132839-1134075 30 2.5
06_01_0892 - 6827510-6827590,6829348-6830412 29 5.7
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 7.6
01_06_0751 + 31690411-31690443,31692900-31694240 28 7.6
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 10.0
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 10.0
07_01_0665 + 5001599-5003149 28 10.0
06_01_0136 + 1043888-1044487 28 10.0
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 36.3 bits (80), Expect = 0.029
Identities = 28/103 (27%), Positives = 49/103 (47%)
Frame = +1
Query: 340 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 519
M+ A I + TD ++ + K +K D+ + +D K + +E DE+++++ C
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199
Query: 520 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKG 648
P +H TKS ++ + D S T S QRF+ G G
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRFERFANGAG 241
>07_01_0161 + 1132505-1132704,1132839-1134075
Length = 478
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = +1
Query: 340 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 519
M+ A I + TD ++ + K +K D+ + ++ K + +E DE+++++ C
Sbjct: 121 MEAALEISSRWPPVTDASL-LRWRKKLKRTSDECSQVMER-CKRRAMEDDEMEQEVRQCA 178
Query: 520 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKG 642
P +H T+S ++ + D S T S Q+F+ G
Sbjct: 179 FPKRIAHATRSFLSSFTGQKKVD-SLITTSTIQKFERLADG 218
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +1
Query: 592 SKYTGSHRQRFDETGKGKGIAGRKDLVD---GSGYVTGYQHKDTYNKSH 729
S Y G R++ +E G G GRK V+ GSGY T Q +++Y +
Sbjct: 144 SGYGGGGRKQQEEESYGSGY-GRKPQVEESYGSGYGTKPQQEESYGSGY 191
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 294 QVRWKSHHALAKRQMDEASQSH*WKENNNNGHGHSLQKTQIGKTR 428
++RWK K++ ++A S ENNN H K Q R
Sbjct: 1006 KLRWKGQKMSKKKEDEDAELSRLKAENNNAEEAHGDAKRQFDSIR 1050
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 388 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 567
TAI F ++ +LG D K +D L +N K +DE+ + P S T+ P
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217
Query: 568 AVDRLTDTS 594
A ++ T TS
Sbjct: 218 ATEQATSTS 226
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 236 RIAPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG 340
R+ P ++ S R P + IP P++ PS+ AT G
Sbjct: 11 RLGPSAAKSTSARVPGV-IPKPIDLPSQRGTATQG 44
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 112 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 219
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
>07_01_0665 + 5001599-5003149
Length = 516
Score = 27.9 bits (59), Expect = 10.0
Identities = 27/115 (23%), Positives = 50/115 (43%)
Frame = +1
Query: 385 DTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAA 564
D I+ +L SV+ D + F++ +K+ V +++I L G+ + K AAA
Sbjct: 290 DYDIYDIELTSVRTNTDLRKLFIETTSKSIIV-IEDIDCSLDLTGK---RKNKKKKDAAA 345
Query: 565 AAVDRLTDTSKYTGSHRQRFDETGKGKGIAGRKDLVDGSGYVTGYQHKDTYNKSH 729
A D D + S + D+ G ++G + +DG G + + +H
Sbjct: 346 AKNDTDGDKKESPPSEEEEKDKEGSKVTLSGVLNFIDGLWSACGGERIIVFTTNH 400
>06_01_0136 + 1043888-1044487
Length = 199
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 620 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 537
R C VY +V+ N+S AAAA+ + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,233,286
Number of Sequences: 37544
Number of extensions: 460523
Number of successful extensions: 1383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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