Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30336
         (519 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A294D Cluster: UPI00006A294D related cluster; n...    39   0.079
UniRef50_Q91873 Cluster: Xenopus laevis tandemly arranged embryo...    37   0.24 
UniRef50_UPI0000E1E696 Cluster: PREDICTED: hypothetical protein;...    34   2.2  
UniRef50_Q12019 Cluster: Midasin; n=4; Saccharomycetaceae|Rep: M...    33   5.2  
UniRef50_Q55EC7 Cluster: RasGEF domain-containing protein; n=1; ...    32   9.0  
UniRef50_Q96WS6 Cluster: Meiotic expression up-regulated protein...    32   9.0  

>UniRef50_UPI00006A294D Cluster: UPI00006A294D related cluster; n=5;
           Xenopus tropicalis|Rep: UPI00006A294D UniRef100 entry -
           Xenopus tropicalis
          Length = 120

 Score = 38.7 bits (86), Expect = 0.079
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 395 RYRDHAGGSPRVRLLHCT 342
           RY DH GGSPR RL+HCT
Sbjct: 86  RYHDHEGGSPRARLIHCT 103


>UniRef50_Q91873 Cluster: Xenopus laevis tandemly arranged embryonic
           U1 snRNA genes U1a/U1b; n=1; Xenopus laevis|Rep: Xenopus
           laevis tandemly arranged embryonic U1 snRNA genes
           U1a/U1b - Xenopus laevis (African clawed frog)
          Length = 166

 Score = 37.1 bits (82), Expect = 0.24
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = -2

Query: 395 RYRDHAGGSPRVRLLHCT 342
           RY DH GGSPR RL HCT
Sbjct: 132 RYHDHEGGSPRARLSHCT 149


>UniRef50_UPI0000E1E696 Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 130

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -2

Query: 395 RYRDHAGGSPRVRLLHCTAEWLV 327
           R R H GGSPRV+LLH T E L+
Sbjct: 88  RDRGHEGGSPRVKLLHRTLELLI 110


>UniRef50_Q12019 Cluster: Midasin; n=4; Saccharomycetaceae|Rep:
            Midasin - Saccharomyces cerevisiae (Baker's yeast)
          Length = 4910

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -1

Query: 294  SFTSTVCDLHFLDDLI*KNNRIRTFIGVVHTRSKLISRLLRSPPQVLFTDDLHCN-NVLR 118
            SFTST+    FL+D++ K+N +++F G        I + + S  ++L +  + C+ N+L+
Sbjct: 2771 SFTSTIFSSQFLEDVVRKSNNLKSFSG------NQIKQSI-SDAELLLSSTIKCSPNLLK 2823

Query: 117  CSPKLFIECRALINPWVRSVSD 52
               + +   + ++  W+R V D
Sbjct: 2824 SQMEYY---KNMLLSWLRKVID 2842


>UniRef50_Q55EC7 Cluster: RasGEF domain-containing protein; n=1;
            Dictyostelium discoideum AX4|Rep: RasGEF
            domain-containing protein - Dictyostelium discoideum AX4
          Length = 960

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 189  ISRLLRSPPQVLFTDDLHCNNVLRCSP 109
            I ++L  PP  LF D+L  NN L+C P
Sbjct: 930  IQKVLTKPPSELFDDELIKNNSLKCEP 956


>UniRef50_Q96WS6 Cluster: Meiotic expression up-regulated protein
           15; n=1; Schizosaccharomyces pombe|Rep: Meiotic
           expression up-regulated protein 15 - Schizosaccharomyces
           pombe (Fission yeast)
          Length = 150

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 355 CSIALRSGWWLTLAIILIFYKFHFYRV 275
           CSIAL   WW+ L ++ IF+    Y V
Sbjct: 42  CSIALIQTWWVLLGLLPIFFALEHYEV 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,117,668
Number of Sequences: 1657284
Number of extensions: 11150448
Number of successful extensions: 23794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23794
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)