Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30336
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    32   0.059
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   5.1  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   9.0  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   9.0  

>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 31.9 bits (69), Expect = 0.059
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 355 CSIALRSGWWLTLAIILIFYKFHFYRV 275
           CSIAL   WW+ L ++ IF+    Y V
Sbjct: 42  CSIALIQTWWVLLGLLPIFFALEHYEV 68


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 315 RLFLFFISFTSTVCDLHFLDDLI 247
           RLF+  I F+   C+ HF++ L+
Sbjct: 13  RLFIIHIHFSHHCCENHFINPLV 35


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 GNRLHDHGISTPGKYDLATENL 433
           G+++H+H ++   + D  TENL
Sbjct: 72  GHKVHEHNLNAVDEEDFDTENL 93


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 59  TDRTHGLMRARHSIKSF----GEQRSTLLQCKSSVNKTCGGERNNLDINLDLV 205
           TD++  +   +H +  +     E  +TLLQ K SV++    +   +DI+ D +
Sbjct: 421 TDKSETVSGFKHDVDVYDTAENEGNNTLLQIKESVHEKTPTQDEPMDISQDTI 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,971
Number of Sequences: 5004
Number of extensions: 46763
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)