Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30336
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30154| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.25 
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   28   5.3  
SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)                      27   9.3  

>SB_30154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +3

Query: 330 QPLRSAMEQPHPGGTACMITVSL 398
           QP RSAM  PHP  TA +ITV+L
Sbjct: 58  QPNRSAMRGPHPERTALVITVNL 80


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +1

Query: 205  VYNPDKSSDSIIFLN*IIQKVQVTHGRSETYKK*E*SQGSTTNHSAVQWSSLTLGEPPA* 384
            ++NP  +  + + ++ + ++ Q+T G  ET    E ++  T + +  + +S T  EPP  
Sbjct: 1397 LHNPSPTPPTALLISPLTKQAQMTRGFLETLDLNEDTRSETPSEATSEAASETHSEPPQV 1456

Query: 385  SRYLYAR 405
                Y R
Sbjct: 1457 FTTAYTR 1463


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 350 HCTAEWLVVDPCDYSY 303
           HC+ +W  V P DYSY
Sbjct: 383 HCSVKWFSVGPKDYSY 398


>SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)
          Length = 420

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -2

Query: 158 FCSRTTCTVTMCSVALRSFL*NVVPSSIRGSDQYRIAHRVYRYTGH 21
           F  +TT  +T+    +R+ + N++ + I   DQY  +++ Y+ T H
Sbjct: 13  FIKKTTNAITINQTRIRTIIVNII-NKIINHDQYYESYQNYQKTYH 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,056
Number of Sequences: 59808
Number of extensions: 371925
Number of successful extensions: 782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)