Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30336
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    30   1.1  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   2.0  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   2.0  

>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 285 STVCDLHFLDDLI*KNNRIRTFIGVVHTRSKLISRLLRSPPQV 157
           ST+ DLH+L+ L   NNR+RT    +    +L    LR+ P V
Sbjct: 215 STLGDLHYLETLSLHNNRLRTLPTDILNLRRLQQLSLRNNPLV 257


>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 285 STVCDLHFLDDLI*KNNRIRTFIGVVHTRSKLISRLLRSPPQV 157
           ST+ DLH+L+ L   NNR+RT    +    +L    LR+ P V
Sbjct: 215 STLGDLHYLETLSLHNNRLRTLPTDILNLRRLQQLSLRNNPLV 257


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
           363, isoform b protein.
          Length = 2692

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 41  PGERSDTDRTHGLMRARHSIKSFGEQRSTLLQCKSS 148
           P ++ D DR H +    + +    +QR  L++C+SS
Sbjct: 296 PSQKDDLDRWHAVALILNELLRISDQRFELIRCESS 331


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
           363, isoform a protein.
          Length = 2695

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 41  PGERSDTDRTHGLMRARHSIKSFGEQRSTLLQCKSS 148
           P ++ D DR H +    + +    +QR  L++C+SS
Sbjct: 296 PSQKDDLDRWHAVALILNELLRISDQRFELIRCESS 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,990,256
Number of Sequences: 27780
Number of extensions: 272901
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)