Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30335
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   1.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.5  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   9.9  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 255 CNVNEEPVSYARKQTNLYLRYVCDHERK 172
           C+  E  +SY   + +  + Y+C+ ERK
Sbjct: 915 CDEEEGHISYHPDKADCRMYYMCEGERK 942


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 535 TRWAVSSSTHTSNKKIS 585
           TR + SSSTHTS+++ S
Sbjct: 384 TRKSTSSSTHTSSQQTS 400


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 267 HRTQCNVNEEPVSYARKQTNLYLRY 193
           HR+ C+ ++  +S     TN Y  Y
Sbjct: 232 HRSWCSSSQPVLSTTNSTTNCYNNY 256


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 351 PLVSPHG*VPPP 386
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,286
Number of Sequences: 336
Number of extensions: 3556
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)