Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30335
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   6.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 600 QDELL*DFFIACMGGRAHSPPGVKWSLEPIDIY 502
           Q ELL +    C   +   PPG   S+ PI++Y
Sbjct: 10  QTELLQELTNDCRYDKMTRPPGEINSINPINVY 42


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 445 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 353
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 445 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLTR 353
           ++LP    ++ LL L+G NR+  G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 490 RFYVVNVYGFQ*PLNTRW 543
           RF   NVY F+ PLN R+
Sbjct: 378 RFIPPNVYRFRPPLNPRF 395


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 323 LACTKSLLVYSTLFIDSFC 267
           L+CT S+L    + +D FC
Sbjct: 123 LSCTASILNLCMISVDRFC 141


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 490 RFYVVNVYGFQ*PLNTRWAVS 552
           RF   N Y F+ PLN R+ ++
Sbjct: 159 RFIPPNAYRFRPPLNPRFGLA 179


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 490 RFYVVNVYGFQ*PLNTRWAVS 552
           RF   N Y F+ PLN R+ ++
Sbjct: 169 RFIPPNAYRFRPPLNPRFGLA 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,982
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)