Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30335
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66830.1 68414.m07596 leucine-rich repeat transmembrane prote...    28   7.1  

>At1g66830.1 68414.m07596 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069:
           Eukaryotic protein kinase domain, multiple PF00560:
           Leucine Rich Repeat
          Length = 685

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 578 KSHNNSSCFINTRALKKRKTDIKVYKHSEKESDRL 682
           K  NN +C IN +  K  K +   +K    ES+ L
Sbjct: 338 KDQNNRTCHINEKLKKTTKPEFLCFKTGNSESETL 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,659
Number of Sequences: 28952
Number of extensions: 278590
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)