Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30334
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    29   0.56 
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    29   0.98 
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   1.7  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        27   3.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.2  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   6.9  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.1  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    25   9.1  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -2

Query: 520 QSKIFNLHCINGFQVLNTTSDQIKRREWQPSELLPTMNVEMFLDLWSGTLLSVQAELKVV 341
           QS +F L   +G      T    ++RE+  SEL     V+M  DLW   + S  A    +
Sbjct: 164 QSALFTLVDGSGSGSATHTDYSGQKREYSASELSGVWAVKMVRDLWKRNVWSGDARAVNI 223

Query: 340 ISAAA 326
           + +AA
Sbjct: 224 MKSAA 228


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 255 QNLLRVTYQHSPIIVDNG*RSARVAAADITTFSSACTDNSVPDHRSKNISTFIVGNNSDG 434
           QNLLR +Y     I+D    S R       TFSS  +  S+ +++ +     +V N S+ 
Sbjct: 351 QNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLR----LLVQNVSEN 406

Query: 435 CHSLRLIWSDVVLR 476
                L+ + + ++
Sbjct: 407 LQKRGLVTNSIAIK 420


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/69 (21%), Positives = 34/69 (49%)
 Frame = -2

Query: 496 CINGFQVLNTTSDQIKRREWQPSELLPTMNVEMFLDLWSGTLLSVQAELKVVISAAATLA 317
           CI  +Q++       +R++WQ   L    N++ F      +LL+  AE +++++      
Sbjct: 550 CITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQN 609

Query: 316 DLYPLSTII 290
           +L  L +++
Sbjct: 610 NLVELWSLL 618


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -2

Query: 478 VLNTTSDQIK-RREWQPSELLPTMNVEMFLDLWSGTLLSVQAELK 347
           ++  ++D+++ RRE Q   +LP+++   FLD  S   +S Q +LK
Sbjct: 174 IIYQSADKLRSRRECQEINVLPSISPSSFLDSPSIMCVSKQPDLK 218


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 24/76 (31%), Positives = 33/76 (43%)
 Frame = -2

Query: 529  ND*QSKIFNLHCINGFQVLNTTSDQIKRREWQPSELLPTMNVEMFLDLWSGTLLSVQAEL 350
            ND      N    N  +++  T D ++    +  ELL   N+  F+ L   +LLS   E 
Sbjct: 1857 NDGYRSAPNFFLENSKKLIRFTFDVLRGVSNKHKELLTARNMAAFVPLIGESLLSSSEE- 1915

Query: 349  KVVISAAATLADLYPL 302
             V ISA   L  L PL
Sbjct: 1916 -VQISALRFLVLLLPL 1930


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 171 VVLSYSSVYNTRYINRLFYARDVFVSDLQNLLR----VTYQHSPIIVDNG 308
           V L+Y  V  T + +++FY +D+    L    +    +TY++S + VDNG
Sbjct: 401 VRLAYEGV-KTVHFDKMFYRKDIAHHALNPKRKTREILTYENSGVSVDNG 449


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 431 RLPLSSLDLVGCCVENLKTINAM*IEYFRLLIVSSSKTSSLIKVTLKFLKNIPSPV 598
           R P +SL   G   E++ TI    +EY  +L   S  T    +     +K +P+P+
Sbjct: 542 RWPTTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCHTYDFPESLSHCVKRLPTPI 597


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 756 LVMIFNIYSIKLDFSLKISNVLSDAIQAITLPSG 655
           L  I N++S +L    +++  ++ AIQA+  P G
Sbjct: 152 LARIANMFSRRLQVQERLTKQVAQAIQAVLKPQG 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,314
Number of Sequences: 5004
Number of extensions: 64670
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)