Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30334
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0115 + 15422523-15422525,15423103-15423609                       29   4.1  
04_01_0563 - 7216923-7217300,7217401-7217544,7217680-7218729           29   5.4  

>02_03_0115 + 15422523-15422525,15423103-15423609
          Length = 169

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 696 VLSDAIQAITLPSGSLLNNNFVGTSAQVSGYGRTGDGMFFKNFNVTFINELVFEELTINS 517
           V+SDA+ AI++ +   + N F GT+ +   +G  G+   + +F V     L+ E   + +
Sbjct: 32  VVSDAVYAISMGTNDFIENYFAGTTRRYLQFG-VGE---YTDFLVGLARGLLVELYGLGA 87

Query: 516 RK 511
           RK
Sbjct: 88  RK 89


>04_01_0563 - 7216923-7217300,7217401-7217544,7217680-7218729
          Length = 523

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 440 LSSLDLVGCCVENLKTINAM*IEYFRLLIVSS-SKTSSLIKVTL 568
           L  + +  CCVENL  ++A  +E  RL++  S SK  S ++V +
Sbjct: 282 LRCVQICSCCVENLAVVDAPCLE--RLVLYDSLSKDDSCVRVKI 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,085
Number of Sequences: 37544
Number of extensions: 379791
Number of successful extensions: 1071
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)