Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30334
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09170.1 68414.m01024 kinesin motor protein-related similar t...    33   0.28 
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    28   6.0  
At5g62640.1 68418.m07862 proline-rich family protein contains pr...    28   7.9  
At5g61865.1 68418.m07761 expressed protein                             28   7.9  

>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
           GB:AAB61066
          Length = 1010

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = -3

Query: 678 QAITLPSGSLLNNNFVGTSAQVSGYGRTGDGMFFKNFNVTFINELVFEELTINSRKYSIY 499
           +A+   +  L+ +   G +  +  YG+TG G   K F +   NEL  E L +N R  S  
Sbjct: 492 EAVFADTQPLIRSVLDGYNVCIFAYGQTGSG---KTFTMMGPNELTDETLGVNYRALSDL 548

Query: 498 IALMVFRFSTQ 466
             L   R STQ
Sbjct: 549 FHLSKIRNSTQ 559


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = +2

Query: 425 LGRLPLSSLDLVGCCVENLKTINAM*IEYFRLLIVSSSKTS-SLIKVTLKFLKNIPSPVL 601
           L  L L++  L+G C E+L       IE   L+ +S +  S SL KV+ +  K I + ++
Sbjct: 148 LNYLRLNNNSLIGTCPESLSK-----IEGLTLVDISYNNLSGSLPKVSARTFKVIGNALI 202

Query: 602 P*PE---TCAEVPTKLLLRRD-PD 661
             P+    C+ VP  L L +D PD
Sbjct: 203 CGPKAVSNCSAVPEPLTLPQDGPD 226


>At5g62640.1 68418.m07862 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 520

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 8   RPADANETAPKNVNNTRSRAKPPPA 82
           RPA++N ++ +N N ++  A PPPA
Sbjct: 298 RPAESNASSFQNANLSKMVAPPPPA 322


>At5g61865.1 68418.m07761 expressed protein
          Length = 417

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 701 RTFFQMLFRQSLYHLDLFLTIISLGPRHRFPVTEEPVTVCFLKISMLLLSMN 546
           RTFFQ   ++SLY    +L+ +       FPVT + + V F  I+ +L S++
Sbjct: 175 RTFFQEFIQKSLY----YLSSVHSQNHDTFPVTVKLLRVLFNNINEVLGSVD 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,706,708
Number of Sequences: 28952
Number of extensions: 321987
Number of successful extensions: 960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)