Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30331
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)                   49   4e-06
SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_3284| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_26840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
          Length = 434

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
 Frame = +2

Query: 425 IPPLHKRLIAEFIDXXXXXXXXXXXXXXAVDTLEIIDTEKFDFQKFSEYYDDYKSAIEFT 604
           +  + KR++AE +D               V ++   + E+F   ++S   D+  S  E  
Sbjct: 252 VASIQKRVVAELLDFLFLYFTKFL-----VFSIFYNNMERFTQLQYSLIIDENTSLKELE 306

Query: 605 SGILFLEIVYRLLVCLFEAICLCGNV-GQIGGATPGKALLGLRVVTASA 748
             IL   + YRL+V ++E + + G + G +GGATPGK  +GL VV+A +
Sbjct: 307 E-ILIQALTYRLMVFMYETLFIIGGLFGGLGGATPGKYFMGLSVVSADS 354


>SB_13097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = -3

Query: 675 PHKQIASNRQTSNLYTISRNNIPEVNSI 592
           PHK I +  + SNL++IS  NIP+++SI
Sbjct: 99  PHKSIITTTRASNLFSIS--NIPKISSI 124


>SB_3284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 233 CNKGNTLNSDIIVLVGSIFVVPENMLHVLR 144
           CN G   NS++I+      ++  N+ HV+R
Sbjct: 182 CNDGECQNSNVILFASQAMIIRSNLQHVVR 211


>SB_26840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 167 QALRIWIQQAQLYQNLTCFPYYMVTFQGLQNHPTNVPLLN 286
           ++L+  ++  +L     C  ++ +  QG Q+HPTN P L+
Sbjct: 201 ESLKNSVKDEELRTYEECIEHWEIESQGEQSHPTNPPELS 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,279,037
Number of Sequences: 59808
Number of extensions: 417143
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)