Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30331
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.58 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    25   1.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    25   1.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 172 CLKICFTFCGCCLS*TLFRTCRWLRGIIN*SFRF*HYLMFK*TF 41
           C+ I  ++C  C+S   F+   WL G  N +F    Y +F   F
Sbjct: 290 CVNIVTSYCKTCISGRAFQVLTWL-GYSNSAFNPIIYSIFNTEF 332


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 192 KHNYIRI*RVSLITWLHSK 248
           +HNYI I  +SL+TW +++
Sbjct: 2   RHNYIVILILSLLTWTYAE 20


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 192 KHNYIRI*RVSLITWLHSK 248
           +HNYI I  +SL+TW +++
Sbjct: 2   RHNYIVILILSLLTWTYAE 20


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 738 VTTRSPSKAFPG 703
           VT RSP +A+PG
Sbjct: 911 VTPRSPGRAWPG 922


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,737
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)