Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30329
         (417 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O62265 Cluster: Putative uncharacterized protein; n=3; ...    31   7.2  
UniRef50_A6DQ65 Cluster: CBS:Transporter-associated region; n=1;...    31   9.6  

>UniRef50_O62265 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 387

 Score = 31.5 bits (68), Expect = 7.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 251 VGCRVVGGIYVVDFRGLRLPLKTRWAK*YPPI*AIKKRFVDAAAISEKEQNVIS 412
           V C    G+Y+VDF   + P+ T+      PI  +K RF++   +  +++ +IS
Sbjct: 135 VVCDAYLGVYIVDFTDEQNPISTQILDSKVPIDGLKPRFLNDLDVISEDELIIS 188


>UniRef50_A6DQ65 Cluster: CBS:Transporter-associated region; n=1;
           Lentisphaera araneosa HTCC2155|Rep:
           CBS:Transporter-associated region - Lentisphaera
           araneosa HTCC2155
          Length = 418

 Score = 31.1 bits (67), Expect = 9.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 284 QRKCRQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKL 177
           Q+ C+ + D RP  G V++ S+   T  Y++  HK+
Sbjct: 39  QKNCQYINDNRPRFGFVLRASSFTFTTSYTLVAHKI 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,105,216
Number of Sequences: 1657284
Number of extensions: 8319281
Number of successful extensions: 16378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16376
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)