Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30329
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   3.6  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   3.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   3.6  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    25   4.7  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   6.2  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    24   8.2  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   8.2  

>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 245 LSVGCRVVGGIYVVDFRGLRLPL 313
           ++ GC   GG++V++F G R+PL
Sbjct: 310 VNFGC-TFGGLFVLEFFGRRMPL 331


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 245 LSVGCRVVGGIYVVDFRGLRLPL 313
           ++ GC   GG++V++F G R+PL
Sbjct: 310 VNFGC-TFGGLFVLEFFGRRMPL 331


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 139 KLMTVSDIYFSYTNL*CATE*RKVNWPVDFCITTPSVGRVSGSWR 273
           K  ++S+IY S  +L  A      N     C T P VGR++ +W+
Sbjct: 415 KCSSLSNIYTS--DLFFAISSSNTNEGDVVCCTAPEVGRIANAWQ 457


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 202 VTLWHIIN*YMKNICRRRSLV 140
           V LWHI N  + N  R+RS++
Sbjct: 461 VVLWHIPNKVLINASRKRSVI 481


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +1

Query: 223 DFCITTPSVGR--VSGSWR 273
           D C T PS GR  + G+WR
Sbjct: 41  DHCTTAPSTGRMYLGGTWR 59


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 158 SETVISLLAKRNSARFPRDGSVVGTRLTSCYDRA*LMEARGRHH 27
           S   + L ++R + +  R+G V+G +++  Y    L + + R H
Sbjct: 292 SSPFLDLQSERQNKKIMRNGLVIGKQVSQNYSSYKLKKRKFRRH 335


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -3

Query: 295 TEIYNVNAAN--YPTPDRQMALLYKN 224
           T  Y  NA+N   PTPD  + + Y N
Sbjct: 18  TTAYGANASNSSVPTPDNTLVVSYTN 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,274
Number of Sequences: 5004
Number of extensions: 33545
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)