Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30329
         (417 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)                  28   3.6  
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             27   6.2  
SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  

>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 200 YSVAHHKLVYEKYMSETVISLLAKRNSARFPRDGSVVGTRLTSCYDRA--*LMEARGRHH 27
           ++  H++  YE Y     I    K  +A+   + +VVG++L    D+A     +A    H
Sbjct: 44  FTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGK-NDQAIEDCTQAMNLDH 102

Query: 26  TYQPAFLK 3
           TY  A+LK
Sbjct: 103 TYTKAYLK 110


>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
          Length = 264

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 200 YSVAHHKLVYEKYMSETVISLLAKRNSARFPRDGSVVGTRLTSCYDRA--*LMEARGRHH 27
           ++  H++  YE Y     I    K  +A+   + +VVG++L    D+A     +A    H
Sbjct: 44  FTGGHYQKAYELYTEALEIDPKNKSTNAKLYYNRAVVGSKLGK-NDQAIEDCTQAMNLDH 102

Query: 26  TYQPAFLK 3
           TY  A+LK
Sbjct: 103 TYTKAYLK 110


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 203 RYSVAHHKLVYEKYMSETVISLLAKRNSARFPRDGSVVGTRLTSCYDR 60
           + S+ H KL  +   SE +  LL  RNS R  R+     TR T C  R
Sbjct: 18  KLSIIHAKLYTD---SEKLSILLYTRNSTRTARNYQYYNTRQTLCRQR 62


>SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 234 YTKINWPVNFTLLCGTS*ISI*KIYVGDGH*FVS*TKFSTIP-ERWQRRRNSANLVLRQS 58
           ++++NW   + L+     +++  I +          KFS +  ER  R   S NLVL Q 
Sbjct: 168 FSRLNWLPIYDLIKQRKLLTLFSILINPDSPLCLRLKFSFVSHERRTRSSTSHNLVLPQP 227

Query: 57  LADGGAWTPSHLPTSL 10
             D G  T S    SL
Sbjct: 228 RTDAGKRTFSFSAVSL 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,254,696
Number of Sequences: 59808
Number of extensions: 270738
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)