Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30329
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83110-5|CAB05527.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.25 
Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    28   3.1  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    27   7.2  

>Z83110-5|CAB05527.1|  387|Caenorhabditis elegans Hypothetical
           protein F57C2.5 protein.
          Length = 387

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 251 VGCRVVGGIYVVDFRGLRLPLKTRWAK*YPPI*AIKKRFVDAAAISEKEQNVIS 412
           V C    G+Y+VDF   + P+ T+      PI  +K RF++   +  +++ +IS
Sbjct: 135 VVCDAYLGVYIVDFTDEQNPISTQILDSKVPIDGLKPRFLNDLDVISEDELIIS 188


>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 272 RQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYMSETVISLLAKRNS 120
           RQL   RP      Q+ST   +L+ SVA  + V +K +  + ++LL +RN+
Sbjct: 110 RQLRTGRPPPPST-QRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNA 159


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 272 RQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYMSETVISLLAKRNS 120
           RQL   RP      Q+ST   +L+ SVA  + V +K +  + ++LL +RN+
Sbjct: 110 RQLRTGRPPPPST-QRSTATFSLKPSVARARPVAQKPILPSKVTLLEERNA 159


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 331 LSPPGFKW*PE-PTEIYNVNAANYPTP 254
           +SPP   + P  PT+ Y+ NA NY  P
Sbjct: 10  ISPPNNHYRPRSPTQSYSSNATNYEQP 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,751,085
Number of Sequences: 27780
Number of extensions: 196456
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)