Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30329
         (417 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79410.1 68414.m09254 transporter-related low similarity to o...    27   3.8  
At3g22040.1 68416.m02780 receptor-like protein kinase-related co...    27   5.1  
At4g27440.1 68417.m03944 protochlorophyllide reductase B, chloro...    26   8.9  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    26   8.9  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    26   8.9  
At3g25410.1 68416.m03160 bile acid:sodium symporter family prote...    26   8.9  

>At1g79410.1 68414.m09254 transporter-related low similarity to
           organic anion transporter 3 [Rattus norvegicus]
           GI:5545293; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 515

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 90  RNSANLVLRQSLADGGAWTP 31
           RNSA ++LRQ+L  GGA  P
Sbjct: 437 RNSATMMLRQALVVGGACCP 456


>At3g22040.1 68416.m02780 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 5 (GI:13506747){Arabidopsis thaliana}
          Length = 257

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 2   SSRRLVGKCDGVHAPPSAKLCRSTRLAEFRRRC 100
           +S  ++ +C G     + + C  T LA FR+RC
Sbjct: 83  NSTTIIFQCRGDSYKSNCRTCYDTALAGFRKRC 115


>At4g27440.1 68417.m03944 protochlorophyllide reductase B,
           chloroplast / PCR B / NADPH-protochlorophyllide
           oxidoreductase B (PORB) identical to SP:P21218
           protochlorophyllide reductase B, chloroplast precursor
           (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B) [Arabidopsis thaliana]
          Length = 401

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 20  GKCDGVHAPPSAKLCRSTRLAEFRRRCH 103
           G  DG  A   +K+C    + EF RR H
Sbjct: 268 GDFDGAKAYKDSKVCNMLTMQEFHRRFH 295


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 290 NLQRKCRQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYM 159
           N ++ C+ LPD      +++    G L LRY VA H LV E  M
Sbjct: 88  NYKKLCQILPDVEEWGQILL---IGTL-LRYVVARHGLVRESLM 127


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 290 NLQRKCRQLPDTRPTDGVVIQKSTGQLTLRYSVAHHKLVYEKYM 159
           N ++ C+ LPD      +++    G L LRY VA H LV E  M
Sbjct: 88  NYKKLCQILPDVEEWGQILL---IGTL-LRYVVARHGLVRESLM 127


>At3g25410.1 68416.m03160 bile acid:sodium symporter family protein
           low similarity to SP|Q14973 Sodium/bile acid
           cotransporter (Na(+)/bile acid cotransporter) {Homo
           sapiens}; contains Pfam profile PF01758: Sodium Bile
           acid symporter family
          Length = 431

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 217 PVDFCITTPSVGRVSGSWR 273
           PV  C TTP +GRV   WR
Sbjct: 68  PVVACSTTPFMGRVGLHWR 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,176,335
Number of Sequences: 28952
Number of extensions: 184354
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)