Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30328
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 33 0.19
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 33 0.25
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 33 0.33
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 31 1.00
11_06_0473 - 23992243-23992542,23993737-23993796 30 1.7
12_02_0320 - 17504511-17505016,17505757-17506147 29 3.0
12_01_1033 + 10629897-10632311,10633874-10633879 29 4.0
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410... 29 4.0
05_05_0246 + 23591759-23593042 29 5.3
05_02_0073 + 6336649-6336710,6336846-6336894,6338079-6338468,633... 29 5.3
01_05_0091 + 18048595-18050559 29 5.3
03_06_0147 - 31980352-31981629 28 7.0
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 28 9.3
06_03_1267 - 28851286-28851306,28851452-28851520,28852031-288520... 28 9.3
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 466 PVAGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 606
P D + EE PP RR+ A + P EDD +EG PA
Sbjct: 195 PEGEASDAEENASEESPPSPPTRGRRRKRAATSDPPPEDDEEEGTPA 241
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 472 AGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPA 606
A T D DEEE A+ R+++ ++ P EDD +EG PA
Sbjct: 224 AATSDPPPEDDEEEGTPAQPRRRKRAATSDP--PPEDDEEEGTPA 266
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 370 SYLLEQPGD--VINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNNRR 543
+Y ++Q D +++ ++FF +LQ + + G P D+E + FN+
Sbjct: 699 TYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDNFNDM- 757
Query: 544 KSVFAETYDPEEDDSDE 594
S +AET P+ +DSD+
Sbjct: 758 -STYAETKYPQGEDSDK 773
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 32.7 bits (71), Expect = 0.33
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 370 SYLLEQPGD--VINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNNRR 543
+Y ++Q D +++ ++FF +LQ + + G P D+E + FN+
Sbjct: 508 TYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDTFNDM- 566
Query: 544 KSVFAETYDPEEDDSDE 594
S +AET P+ +DSD+
Sbjct: 567 -STYAETKYPQGEDSDK 582
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 500 QTKKSRQWRALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLRRSGAYCC 670
+++ R R+ + G +SPR +PKR ++ P P R P R + CC
Sbjct: 131 RSRSPRYRRSPSYGRRSYSPRDRSPKRRSYSRSPPPARARSYSRSPPPPRAALFACC 187
>11_06_0473 - 23992243-23992542,23993737-23993796
Length = 119
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +1
Query: 358 EFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARFNN 537
+ YL +++ ++FF +LQ + + G P + D+E N+
Sbjct: 13 QMEFKYLKINGRGILSKPIQFFDKLQELFSGSSANGTYMQDPSSATDFDDETEDFDFLND 72
Query: 538 RRKSVFAETYDPEEDDSDE 594
S +AET P+ +DSD+
Sbjct: 73 M--STYAETKVPQGEDSDK 89
>12_02_0320 - 17504511-17505016,17505757-17506147
Length = 298
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -2
Query: 709 PEPAAFAARQENGTAVCPGPPQRDGLSVRPTWGTRQ 602
P PA A Q G A P P Q+ WGTRQ
Sbjct: 18 PAPAPAAEPQTTGNAPPPPPQQQQQQPEAAKWGTRQ 53
>12_01_1033 + 10629897-10632311,10633874-10633879
Length = 806
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 417 VLHKVTKQQDDDHRTGSCRRH 479
V H DDDHRT CR H
Sbjct: 226 VAHPADDDDDDDHRTRRCRTH 246
>09_04_0075 -
14340458-14340551,14340643-14340814,14340895-14341066,
14341617-14341811,14341886-14342053,14342150-14342335,
14342797-14342881,14342896-14343206,14344222-14344569
Length = 576
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 502 DEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSL 681
DEE+ A RR++ + EEDD D+ ++ +R R E R ++
Sbjct: 54 DEEDEEAAAAAGRRRANGRHEEEEEEDDDDDEVDNDVRRAPERRPRQVELRRDCPYLDTV 113
Query: 682 DAQQMQQVLDAMFEK 726
+ +QVLD FEK
Sbjct: 114 N----RQVLDFDFEK 124
>05_05_0246 + 23591759-23593042
Length = 427
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 700 AAFAARQENGTAVCPGPPQRDGL 632
AA AAR+ G A P PP+RD L
Sbjct: 160 AARAAREHGGKAAPPSPPERDFL 182
>05_02_0073 +
6336649-6336710,6336846-6336894,6338079-6338468,
6338677-6338902,6338983-6339270,6339594-6339967,
6340044-6340736
Length = 693
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 352 LLEFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPPVARF 531
L + T+ LL +++ ++FF +LQ + G P + D+E+ +F
Sbjct: 454 LSQATLDALLINDRGILSKPIQFFDKLQELFSGCSADGAFMEDPSSAADFDDEDDEDDKF 513
Query: 532 N-NRRKSVFAETYDPEEDDSDE 594
+ S +A+T P+ +D D+
Sbjct: 514 DFLNDMSTYADTKVPQGEDFDK 535
>01_05_0091 + 18048595-18050559
Length = 654
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 568 DPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFE 723
D E+ S A A PK D+ L+ AVRG+LL R L Q+ D +E
Sbjct: 515 DGEDFLSSMVASASVPKEDS----LSGAVRGVLLGRDLKPSSSQKASDKAYE 562
>03_06_0147 - 31980352-31981629
Length = 425
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +1
Query: 493 IISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLF 672
I+ + PP AR + V ++ +D + +EG+ AV ++A RL + VR +L F
Sbjct: 297 ILQPSQPPPPARATTSTEIVASQQHDESGAEEEEGSRAVVAAANAP-LRLDDGVR-LLGF 354
Query: 673 RSLDAQ 690
+ + +
Sbjct: 355 QGAEVE 360
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 661 CPGPPQRDGLSVRPTWGTRQGL 596
C P VRPTW +R+GL
Sbjct: 319 CDNNPNNRNYGVRPTWNSRRGL 340
>06_03_1267 -
28851286-28851306,28851452-28851520,28852031-28852066,
28852381-28852486,28852869-28852997,28853685-28853797,
28853907-28853993,28854106-28854543
Length = 332
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 469 VAGTPDESIISDEEEPPVARFNNRRKSVFA-ETYDPEEDDSDEGAPAVFPKSDAQ 630
VA T D E +ARF +++ A E Y+ EED+ +E + DAQ
Sbjct: 32 VAPTVDHLAAVAAEAEAMARFEEEHRALGAEEEYEEEEDELEEEEEEMEEDEDAQ 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,505,619
Number of Sequences: 37544
Number of extensions: 439204
Number of successful extensions: 1401
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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