Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30328
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)          77   2e-14
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   1e-07
SB_19072| Best HMM Match : RIIa (HMM E-Value=3.5e-07)                  34   0.11 
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_21541| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)                    30   2.3  
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                30   2.3  
SB_9442| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)           29   4.1  
SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   5.4  
SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26)          28   7.2  
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)                28   7.2  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                28   7.2  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)             28   9.5  

>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 43/111 (38%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
 Frame = +1

Query: 433 QNNRTTTIVRGPVAGTPDESIISDEE----EPPVARFNNRRKSVFAETYDPEEDDSDEGA 600
           + N+   +  GP     D++   DE+    EPP  R+  RR+SV AE + P+ +D  +  
Sbjct: 62  EKNKEKGVSFGPPGNDEDDTYNEDEDDEMPEPPKNRYA-RRQSVCAEPFHPDSEDEGDEQ 120

Query: 601 PAVFPKSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVI 753
           P V+PK+D QR RL +A++ ILLF++L  +Q+ +VLDAMFE++++ G+++I
Sbjct: 121 PIVYPKTDEQRQRLNDAIKNILLFKNLAKEQLNEVLDAMFERKTQAGDHII 171


>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
          Length = 373

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
 Frame = +1

Query: 319 RIQVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESII 498
           +  +P  L  +L EF +  + E P D++ +A ++F  L+  +         A +  ES  
Sbjct: 6   QFSIPPGLSSLLEEFVVKCIQENPEDIVEFAADYFNMLKRFKEKKAASKQAAQSKKESED 65

Query: 499 SDEEEP---PVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILL 669
            D+  P   P+ +  +RR +V AE Y+P E+ +D  A    PKS+ QR  L + +  + L
Sbjct: 66  KDDLAPAEQPIIKGRSRRAAVSAEPYNPNEN-ADFKAK-FHPKSEEQRNHLKKKLLELWL 123

Query: 670 FRSLDAQQMQQVLDAMFEKRSEPGEYVIR 756
           F     + +  +LD+MFEK+  P E +I+
Sbjct: 124 FEKFHREDLDVILDSMFEKKVSPEEIIIK 152



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 628 QRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIR 756
           +R R  E ++ + + + L   ++ +V DA++ K  + GE VIR
Sbjct: 234 RRERNIELLKSVSILKELKPDELDKVSDALYPKEFKDGEAVIR 276


>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
 Frame = +1

Query: 370 SYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDE---------SIISDEEEPPV 522
           S   EQP D++++A  +F++L  +R   I       T +E         S+ SD  + P 
Sbjct: 223 SIFSEQPDDLVDFAASYFSKLNTSRKP-IHSSSTPSTQEEDDFYCSESLSLPSDRFKRPS 281

Query: 523 ARFNNR----RKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRGILLFRSLDAQ 690
            + N+R    R SV  E Y+P   +    A   +PKS+  R RL   +  I +F+S    
Sbjct: 282 YQQNHRLYLRRDSVAGEVYEPVNSNC-VSAQRFYPKSEDARKRLENVIGNIFIFKSCGKD 340

Query: 691 QMQQVLDAMFEK 726
           Q+  +LDAM+ K
Sbjct: 341 QINMMLDAMYIK 352


>SB_19072| Best HMM Match : RIIa (HMM E-Value=3.5e-07)
          Length = 74

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 325 QVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNRTT 450
           +VP  L ++L  F ++ L E+P DV+ +  +FF      R T
Sbjct: 7   EVPQGLEDLLEAFILTVLKEKPEDVVKFGSQFFASANTKRKT 48


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 509 KSRQWRALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLRRS 655
           KS + RA ++    ++P+ +TPK ++  ++ L   PSR    P S +R+
Sbjct: 603 KSARTRAWSVSPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRT 651


>SB_21541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 527 ALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSL 646
           ALT  + PFSP  + P  + LT    P SP++    P SL
Sbjct: 61  ALTAYSRPFSPDSLFPPPLALTAYSRPFSPAKLIARPFSL 100


>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
          Length = 442

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 319 RIQVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESII 498
           +++VP   + +L       L EQP D++ +A ++F    + R  T       G   E ++
Sbjct: 9   KLRVPPGFQNLLEGLAREVLREQPDDIVQFAAQYFKNQLSIREETGKDDAKRGENLEKLM 68

Query: 499 SDEE 510
             EE
Sbjct: 69  KGEE 72


>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 958

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +1

Query: 481 PDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAVRG 660
           P +   ++ E P   ++NN    +  +  +P+    D+    V PK D Q  R  EAV  
Sbjct: 257 PIQDQYNNPEGPIQDQYNNADGPIQDQYNNPDGPIQDQNESHVGPKQDQQEERSTEAVGD 316

Query: 661 I-LLFRSLDAQQMQQVLDAMFEKRSEPGEYV 750
           +  L  + D  Q Q   +A       P E V
Sbjct: 317 LPALIANTDQWQAQGDDEATQNHDDNPNERV 347


>SB_9442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 750 YVLAGLGSLFEHRIQNLL---HLLRVKRTEQQYAPDRL 646
           Y+L GL  L EH+I  LL   ++L V RT + ++ DRL
Sbjct: 70  YLLHGLKRLCEHKISGLLDRANVLTVLRTARLFSLDRL 107


>SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)
          Length = 683

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +1

Query: 469 VAGTPDESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAE 648
           V+G   + ++   +  P+ +  +    V A T  P      +        +D +R R+  
Sbjct: 263 VSGNLMQEMVKQSKNVPMFKVEDAYTGVVAHTLGPSFVSVTQRVGGKRCVNDTRRLRVPG 322

Query: 649 AVRGI-LLFRSLDAQQMQQVLDAMFEKRSEPGE 744
           + R + +L   +DA++ QQV + + E+++E  E
Sbjct: 323 SRRFLCILLNVIDAEESQQVEEELQEEKTETEE 355


>SB_3363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 750 YVLAGLGSLFEHRIQNLL---HLLRVKRTEQQYAPDRL 646
           Y+L GL  L EH+I  LL   ++L V RT + ++ DRL
Sbjct: 292 YLLHGLKRLCEHKISGLLDRANVLTVLRTARLFSLDRL 329


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 566  MTPKRMILTKEPLPCSPSRTHRE 634
            MTP R  LT   LPC  SRT+ E
Sbjct: 941  MTPSRASLTPTHLPCRDSRTNSE 963


>SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 716 IASRTCCICCASRERNSS 663
           IAS  CC CC  R R+SS
Sbjct: 402 IASCICCCCCCCRRRSSS 419


>SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26)
          Length = 376

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +1

Query: 616 KSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIR 756
           K +  +  + EA+      ++L+A Q+++V++ M E+  +  EY+I+
Sbjct: 136 KINPSKELIKEAILDNDFLKNLEASQVREVVECMCERMFKRDEYIIK 182


>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
          Length = 405

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = +1

Query: 433 QNNRTTTIVRGPVAGTPDESIISDEEEP-PVARFNNRRKSVFAETYDPEEDDSDEGAPAV 609
           Q N   + +  P     +     D++   P       + S  AE   P E DS+EG P +
Sbjct: 247 QENPVDSQLSEPAEQAQESEKADDKKSTEPAEPVEQSQDSGVAEAESPAEQDSEEGTPGM 306

Query: 610 FPKSD 624
            P  D
Sbjct: 307 SPPVD 311


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 484 DESIISDEEEPPVARFNNRRKSVFAETYDPEEDDSD 591
           D   +SDE +  V    N R+++    Y+ ++DDSD
Sbjct: 447 DYDYVSDESDDWVPFDRNSRRNINNNNYESDDDDSD 482


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 396 RDQLRGRVLH-KVTKQQDDDHRTGSCRRHT 482
           RD L GR+   K+T+++ D   TG C+R T
Sbjct: 299 RDYLEGRLTEWKITEEESDYPSTGFCKRVT 328


>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
          Length = 807

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 281 SLSRYYPSGNCRATRY 234
           SLSRYYPSGN ++  Y
Sbjct: 278 SLSRYYPSGNSQSRYY 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,249,240
Number of Sequences: 59808
Number of extensions: 499817
Number of successful extensions: 1404
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)