Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30328
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31150.1 68414.m03811 expressed protein EST gb|Z33866 comes f...    32   0.48 
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    30   1.5  
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    30   1.5  
At4g22420.1 68417.m03240 expressed protein predicted protein, Ar...    30   1.9  
At2g28690.1 68415.m03487 expressed protein                             30   1.9  
At3g29310.1 68416.m03680 calmodulin-binding protein-related            29   2.5  
At1g32660.1 68414.m04028 F-box family protein contains Pfam prof...    29   4.4  
At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein si...    28   5.9  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    28   7.7  
At5g40590.1 68418.m04926 DC1 domain-containing protein predicted...    28   7.7  

>At1g31150.1 68414.m03811 expressed protein EST gb|Z33866 comes from
           this gene
          Length = 673

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 723 FEHRIQNLLHLLRV-KRTEQQYAPDRLSETGSLCVR 619
           FEH++++ LH+ R  K+ +QQ   D+L E   +C R
Sbjct: 607 FEHQLESSLHIARAHKQEQQQQQTDKLKENLMVCQR 642


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 439 NRTTTIVRGPVAGTPDESIISDEEE---PPVARFNNRRKSVFAETYDPEEDDSDEG 597
           N TT  V+ P+   P+  ++S E E    PVA          AE YDP   D DEG
Sbjct: 147 NGTTRDVQAPIE--PERVVVSHEPEVEPEPVASIEEEDLDNVAEVYDP--SDKDEG 198


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +1

Query: 439 NRTTTIVRGPVAGTPDESIISDEEE---PPVARFNNRRKSVFAETYDPEEDDSDEG 597
           N TT  V+ P+   P+  ++S E E    PVA          AE YDP   D DEG
Sbjct: 147 NGTTRDVQAPIE--PERVVVSHEPEVEPEPVASIEEEDLDNVAEVYDP--SDKDEG 198


>At4g22420.1 68417.m03240 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 184

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
 Frame = +1

Query: 376 LLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEE---------PPVAR 528
           + E P D+IN   E F RL   R TT+ +  V   P  S+I   E+         PP   
Sbjct: 1   MAECPTDLIN---EMFLRL---RATTLKKCRVLSKPCFSLIDSPEKRVIERSDSPPPPLG 54

Query: 529 FNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAE 648
           FNN    + A  YD  +DD +EG      KS A+R  +A+
Sbjct: 55  FNNHLLPL-ANAYD--DDDEEEGNE--LKKSQARRNGVAK 89


>At2g28690.1 68415.m03487 expressed protein
          Length = 231

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 726 LFEHRIQNLLHLLRVKRTEQQYAPDRLSE 640
           L +  ++NLLHLL++ R E+  A D+L +
Sbjct: 41  LHQEEVKNLLHLLKLARQERDEAKDQLQK 69


>At3g29310.1 68416.m03680 calmodulin-binding protein-related
          Length = 551

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 391 GDVINYAVEFFTRLQNNRTTTIVRGP----VAGTPDESIISDEEEPPVARFNNRRKSVFA 558
           GDV+   V  F  L  NR    V G      +   D+S+  DEE   ++R N R++S+ A
Sbjct: 295 GDVVKPPVMKFVVLDKNRNVCQVYGNRHDLTSSAEDDSVDGDEETLVMSRDNGRKQSLKA 354


>At1g32660.1 68414.m04028 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 446

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 591 VRIILFGVISLGENGFAPIVKARHWRLFFV*YYGL 487
           VRI  FG    GE   AP+  +R  R F++ YY +
Sbjct: 357 VRICFFGTNKAGEIIIAPMFLSRDVRSFYIFYYNV 391


>At2g19440.1 68415.m02269 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]; an isoform
           contains a non-consensus GA-AG intron
          Length = 478

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 630 LCVRLGEHG----RGSFVRIILFGVISLGENGFAPIVKARHWRLF 508
           L  RLGE+     R +++ + LFG++       AP    RHW +F
Sbjct: 284 LLPRLGENRGTPLRPTYIEVYLFGLLDEDAKSIAPGEFERHWGIF 328


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 379 LEQPGDVINYAVEFFTRLQNNRTTTIVR 462
           LEQP D ++Y ++F + LQN  + ++ R
Sbjct: 725 LEQPDDPVSYFMKFLSTLQNIPSVSLFR 752


>At5g40590.1 68418.m04926 DC1 domain-containing protein predicted
           protein, Arabidopsis thaliana
          Length = 234

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -2

Query: 586 NHPLRGHKSRRKR--ICADC 533
           NHPLRGHK   K   IC+ C
Sbjct: 13  NHPLRGHKCEAKDEIICSGC 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,941
Number of Sequences: 28952
Number of extensions: 338463
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)