Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30327
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 47 3e-06
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 44 2e-05
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 42 1e-04
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 41 2e-04
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 38 0.002
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.061
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.32
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 30 0.43
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 29 0.75
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 28 1.3
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 27 2.3
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.0
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 4.0
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 5.3
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 5.3
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 7.0
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 7.0
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 7.0
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 9.2
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 9.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.2
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 47.2 bits (107), Expect = 3e-06
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = +1
Query: 226 TTRDGLHRATCSNLA---ELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDL 396
TT + + T S++A + K +++ + LDL + ++ +L + + + L +
Sbjct: 129 TTLNSTSKTTTSSVAVDDQKSKSDSKKERRDWTCLDLGGIGLRNVSTDLFKFSFLTELYI 188
Query: 397 STNGIQNLNKFLHNAKKLVHLNLANNRIKELAMS-HLPASVSSLDLINNLLRDVPSDLGH 573
+ N + L + K LV L+ + N IK + L + + L +N++ +P++LG
Sbjct: 189 NHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGT 248
Query: 574 LTSLEHLELEGNPLDCSCENILL 642
L L+ L +EGNPL +N ++
Sbjct: 249 LFQLKILGIEGNPLQDVYKNQIM 271
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 298 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNR 477
K N+ ILD S N+I + EL LTE+ + L N I + L +L L + N
Sbjct: 202 KLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNP 261
Query: 478 IKELAMSHLPAS 513
++++ + + S
Sbjct: 262 LQDVYKNQIMES 273
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 44.0 bits (99), Expect = 2e-05
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +1
Query: 295 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANN 474
++ N+ L L N I K+ + LTE LDL N I + L N K L +L+L+ N
Sbjct: 59 ERFKNLQSLCLRQNQIKKIESVPETLTE---LDLYDNLIVRIEN-LDNVKNLTYLDLSFN 114
Query: 475 RIKELA-MSHLPASVSSLDLINNLLRDVPSDLGHLTSLEHLELEGNPL 615
IK + ++HL + +L + N +R + +L L L +LEL GN +
Sbjct: 115 NIKTIRNINHL-KGLENLFFVQNRIRRI-ENLEGLDRLTNLELGGNKI 160
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 319 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLH-NAKKLVHLNLANNRIKELAM 495
LDLS N +T++ + L L ++ +L+L++N I F H + L L L+ N + L+
Sbjct: 361 LDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLSG 420
Query: 496 SHLPASVSSLDLINNLLRDV 555
S+ LD+ +N + DV
Sbjct: 421 LENVPSLEKLDIRDNSITDV 440
Score = 35.1 bits (77), Expect = 0.011
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 370 LTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK------ELAMSHLPASVSSLDL 531
L +V+LDLS N + + L +L LNLA+N+I +++SHL V S +
Sbjct: 355 LQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNH 414
Query: 532 INNLLRDVPSDLGHLTSLEHLELEGNPL 615
+ +L S L ++ SLE L++ N +
Sbjct: 415 LTSL-----SGLENVPSLEKLDIRDNSI 437
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 307 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 486
N+ LD+S+N + L L L + L + +N + +L+ H L+ L+ NNRIKE
Sbjct: 669 NLQYLDISYNQLEDLTG-LSSLIHLRELKVDSNHLWSLDGIQH-LDGLLKLSACNNRIKE 726
Query: 487 LAMSHLPA-SVSSLDLINNLLRDVPSDLGHLTSLEHLELEGNPL 615
L+ ++ + L L NN + ++ ++ L +L L+L+ N L
Sbjct: 727 LSFTNSNLHRLEELLLGNNEIEEI-EEISSLQNLMVLQLDNNKL 769
Score = 32.7 bits (71), Expect = 0.061
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Frame = +1
Query: 358 ELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPASVSSLDLIN 537
++ RL +V T + N + + + +L L+NN L H+ V L+L N
Sbjct: 817 DIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELAN 876
Query: 538 NLLRDVPSDLG-HLTSLEHLELEGNPLDC--SCENILLRDRLIIANVVIDNVK--CSLPT 702
L++VP + + +L L+L N + S + + + RL + I ++ C +
Sbjct: 877 VQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILA 936
Query: 703 KLKGQSWLELK 735
LK + L+L+
Sbjct: 937 NLKQLNVLDLR 947
Score = 29.9 bits (64), Expect = 0.43
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 307 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 486
N+ +LDLSHN I+ + L L + L L N I+ + L LN+ + R+
Sbjct: 892 NLRVLDLSHNYISDI-ESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMNP 950
Query: 487 LAMSHLPASVSSL 525
L + P S+
Sbjct: 951 LNFNIYPVIDDSI 963
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 37.5 bits (83), Expect = 0.002
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = +1
Query: 304 HNINILDLSHNNITKLNHE-LDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRI 480
H + L++SHN L + ++R ++ LD+S N K + ++L LN++ N I
Sbjct: 429 HELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDI 488
Query: 481 KE---LAMSHLPA-SVSSLDLINNLLRDVPSDLGHLTSLEHLELEGN 609
E L S L S+ L++ NN L +P +L +L +L+L N
Sbjct: 489 YELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYN 535
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 307 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 486
N+ LDLS+NN + L+++ TL+ S N + ++ + + KL HL L N +
Sbjct: 526 NLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSN 585
Query: 487 LAMSH--LPASVSSLDLINNLLRDVPS 561
L ++ ++DL N + ++ S
Sbjct: 586 RLPQEIGLLKNLETIDLSYNAITNIAS 612
Score = 34.7 bits (76), Expect = 0.015
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Frame = +1
Query: 310 INILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNK------FL-HNAKKLVHLNLA 468
+ +L++S N+I +ELD L + LS N ++ LN FL H+ + LV+L
Sbjct: 478 LEVLNMSRNDI----YELDPL---IFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYL 530
Query: 469 ----NNRIK-ELAMSHLPASVSSLDLINNLLRDVPSDLGHLTSLEHLELEGNPL 615
NN + L ++ L + + +L+ +NLL + S +G L L+HL L+ N L
Sbjct: 531 DLSYNNFVTFPLIITEL-SQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDL 583
Score = 28.7 bits (61), Expect = 0.99
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Frame = +1
Query: 253 TCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFL 432
+C+N Y K ++ LDL NNI E+ +++ + ++LS+N ++ + +
Sbjct: 712 SCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPV 771
Query: 433 HNAKKLVHLNLANNRIKELAMSHLPASVSSLDLINNLLRD---VPSDLGH--LTSLEHLE 597
+KKL ++ +I + +S+SS + + + + V + LG+ T+LE+ +
Sbjct: 772 ATSKKLTR-TISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFK 830
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 32.7 bits (71), Expect = 0.061
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 298 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNR 477
K + L++ N + + L RL + LD+S N I+ L + L L+++ NR
Sbjct: 73 KFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNR 132
Query: 478 IKELA--MSHLPASVSSLDLINN 540
+ EL ++H+P ++ L + NN
Sbjct: 133 LFELPTYIAHMP-NLEILKIENN 154
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 30.3 bits (65), Expect = 0.32
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = +1
Query: 247 RATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNK 426
RA+ SN E K + + N +L ++ + + + LTE S NG+Q+L +
Sbjct: 302 RASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQE 361
Query: 427 FLH--NAKKLVHLNLANNRIKELAMSHLPASVSSLDLINNLLRDV 555
+ NA+KL H N EL + +DL +N+ R++
Sbjct: 362 KMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDL-DNIKREL 405
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 29.9 bits (64), Expect = 0.43
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 376 EVVTLDLSTNGIQNLNKFLHNAK---KLVHLNLANNRIKELA 492
+V+++ LS N +Q++ A+ KL++L+LANNRI L+
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLS 256
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 29.1 bits (62), Expect = 0.75
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = -1
Query: 761 FTDLQISFVFNSSQDWPFSLVGKEHFTLSITTFAIINRSRSKMFSQEQS-NGLPS--NSK 591
F+DL + FV+ +S+ P++ + HF L+ + +I+ +FS+ Q LPS N
Sbjct: 286 FSDL-LKFVYKTSKPSPYAKISLLHFLLTESKHFLIS---DHIFSEIQKVYFLPSSQNDS 341
Query: 590 CSKLVKCPRSEGTSLKRLLIKSNEL 516
+V C R + T + K+ L
Sbjct: 342 FDDVVACLRQKSTPYLSFIKKARHL 366
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 397 STNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPASVSSLDLINNLLRDVPSDLGHL 576
ST+ +Q + N + N + K++ +S + V SL L R V + ++
Sbjct: 435 STSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYI 494
Query: 577 TSLEHL-----ELEGNPLDCSCE 630
S EH EL+G+ LDC C+
Sbjct: 495 -SPEHQVQLIQELDGHVLDCVCD 516
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 2.3
Identities = 25/108 (23%), Positives = 51/108 (47%)
Frame = +1
Query: 295 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANN 474
Q + N + DLS + L ++L R+ V +L N +NLN+++ + ++ +
Sbjct: 72 QSYLNDVLQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFISGEVESMTSDFK 131
Query: 475 RIKELAMSHLPASVSSLDLINNLLRDVPSDLGHLTSLEHLELEGNPLD 618
+ + L + L + L+L+++ D PSD +++ L LD
Sbjct: 132 KFQSL-LKTLETDIEGLNLVDH-THD-PSDESIKQTVQRLRSSIEGLD 176
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 514 VSSLDLINNLLRDVPSDLGHLTSLEHLELEGNPLDCSCENILLRDRLII 660
++ L N++ P+DL L H+ L G + CS ++ +D L++
Sbjct: 171 IARFRLYGNVVPVFPADLDARLDLAHMYLGGLVVQCSDQHFGKKDNLLL 219
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 4.0
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Frame = +1
Query: 268 AELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLH---N 438
AE+ + +K + + L +T+ H + V T + +L++++H N
Sbjct: 180 AEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENVWQAVYTAGVLLPSPVSLSRYMHRSLN 239
Query: 439 AKKLVHLNLA-----NNRIKELAMSHLPASVSSLDLINNLLRDVPSDLGHLTS-LEHLEL 600
KKL + A + KE A HLP + + L L+DVP+ L+ +E EL
Sbjct: 240 WKKLYDIGFAPFPLGSTEKKETAKYHLPPNTQTPGLRPMELKDVPAVQSLLSQYMERFEL 299
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 265 LAELYKFTLRQKHHNINILDLSHNN-ITKLNHELDRLTEVV 384
L+ ++K HNI+I+DL+H N I L + VV
Sbjct: 170 LSTVFKNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVV 210
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 5.3
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +1
Query: 241 LHRATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL 420
L + +++AEL TL H + LD+S NNI + LD L + L +
Sbjct: 273 LSSTSLADVAELPVHTL----HKLTFLDISENNIRDI-RSLDHLRTLENLKHLRITLSYF 327
Query: 421 NKFLHNAKKLV 453
NK AK LV
Sbjct: 328 NKPTDIAKLLV 338
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 202 CPESCVCSTTRDGLHRATCSNLAELYKFTLRQKHHNINILDLS 330
CP+ V TRD ++ A + + K Q N +ILD S
Sbjct: 466 CPKHMVWMDTRDEIYEAIMDSGYNMEKGFFAQSFENNDILDAS 508
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/94 (23%), Positives = 40/94 (42%)
Frame = +1
Query: 304 HNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 483
H ++D+SH N N L + + + + LS G ++F+ A+++ L +
Sbjct: 723 HTHVVIDISHGNEYTANDSLAKASTIDPIYLSVFG----SRFMAVAEQMGRA-LQKTSVS 777
Query: 484 ELAMSHLPASVSSLDLINNLLRDVPSDLGHLTSL 585
L S + D NL+ + P HL S+
Sbjct: 778 TNVKERLDYSCALFDAKGNLVANAPHMPVHLGSM 811
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +3
Query: 528 FDQQSFKRCSFRSWAFDKFGTFGIRRQPIRLFL*KHFAS---RPINYSKR--SDRQCKMF 692
+D+ SF S D F TF + PIRL + KH S +PI Y R D MF
Sbjct: 705 YDKDVVYCMSFFSPHMD-FNTFNLNIGPIRLNVYKHLNSDGHQPIRYMMRETDDEDAVMF 763
Query: 693 FTD 701
+
Sbjct: 764 VVE 766
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1
Query: 271 ELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVT 387
ELY F+++QK+ ++ ++ N+ +LN L ++ V T
Sbjct: 641 ELYSFSVKQKNQRTHVFSVT--NVDELNDWLVKINFVST 677
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 361 LDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPA 510
L R + LDL+ NG+ L LH A + L ++ + +A +H+ A
Sbjct: 238 LQRNVVIELLDLAPNGVSFLGNVLHPAGNIATF-LLSSGLGRVADNHISA 286
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +1
Query: 268 AELYKFTLRQKHHNINILDLSHNNITKLN---HELDRLTEVVTLDLSTNGIQNLNKFLHN 438
++L+ +LRQ++ + N+L+L + T L+ + LD ++E+V +G++ +
Sbjct: 473 SDLWIKSLRQEYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEE 532
Query: 439 AKKLVHLNLAN 471
K LAN
Sbjct: 533 NKTNKSAILAN 543
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 286 TLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGI 411
T+R ++H +N +L H + + RL + LD S+ G+
Sbjct: 911 TIRTRYHGMNCQNLIHYSFSYAIEFAQRLMRLSILDASSIGL 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,980
Number of Sequences: 5004
Number of extensions: 62903
Number of successful extensions: 243
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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