Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30327
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    36   3e-04
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +1

Query: 319 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL-NKFLHNAKKLVHLNLANNRIKELAM 495
           LDLS N +T +   L  L  + TLDL  N I N  N    N  +L  L L  N I  L+ 
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495

Query: 496 SHL--PASVSSLDLINNLLRDVPS-DLGHLTSLEHLELEGN 609
             L    ++  L+L  N ++ V          LE + L+GN
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGN 536



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +1

Query: 307 NINILDLSHNNITKLN-HELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 483
           N+ IL+L+ N +  +  +  +R   +  + L  N + ++N    +   L+ LNL+ N I+
Sbjct: 503 NLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIE 562

Query: 484 ELAMSHLPASVSSLDLINNLLRDV 555
               + +P ++  LD+  N +  +
Sbjct: 563 WFDYAFIPGNLKWLDIHGNFIESL 586



 Score = 29.1 bits (62), Expect = 0.049
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = +1

Query: 310 INILDLSHNNITKLNHELDR-LTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 486
           +N L LS N I  ++    R  +++  LDLS N + ++   L +   L  L+L  NRI  
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRIS- 467

Query: 487 LAMSHLPASVSSLDLINNLLRDVPSDLGHLT 579
              +    S  +LD +   LR + +D+G+L+
Sbjct: 468 ---NFYNGSFRNLDQLTG-LRLIGNDIGNLS 494


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 192 SNRLSRKLRLQYYSRWLTSCHVQ 260
           S  LS K R +Y++R + S H Q
Sbjct: 245 SPELSNKQRFEYFTRTIPSDHYQ 267


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 514 VSSLDLINNLLRDVPSDLGHLTS 582
           + S+D ++NL+  V +++ HLT+
Sbjct: 478 LDSVDRLDNLMAQVNTEMTHLTN 500


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 644 RSKMFSQEQSNGLPSNSKCSKLVKCP 567
           R K  S +  NGL + SK    + CP
Sbjct: 210 RPKFPSMDNINGLSTESKADLPLLCP 235


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 288 PPPKAP*H*YFRSFPQ 335
           PPP    H Y R FP+
Sbjct: 322 PPPNLDYHDYSRQFPR 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,206
Number of Sequences: 438
Number of extensions: 4222
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)