Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30326
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0373 + 2897874-2898911                                           31   1.2  
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176...    29   3.5  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    29   4.7  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           28   6.2  

>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = +2

Query: 473 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVTLAPVEDSITSFTTTAGAA 649
           L+ ++A  P   S  + TTT  AAT     T  S+  TS T     +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTSTT----SNGATSVTAAATAA 308


>10_01_0154 -
           1764554-1764727,1764829-1764927,1765710-1766172,
           1766255-1766541
          Length = 340

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 630 VNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALV 457
           V DV  SS    V  + N  VS G+KT ++ P+V     ++  +  + T V+ND  L+
Sbjct: 157 VEDVEISSQTLKVLTIKNTHVSYGNKTTISTPSVTY---LKLWSPLNGTYVLNDMPLL 211


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 666 GSKTIVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVN 520
           G K+ + +PA+     + S+   S+T+ +N+EV+   +T+    AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -3

Query: 654 IVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 475
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 474 NDE 466
           ++E
Sbjct: 333 SEE 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,225
Number of Sequences: 37544
Number of extensions: 166130
Number of successful extensions: 410
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)