Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30326
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    29   2.9  
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    29   2.9  
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,...    27   9.0  

>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 560 PTDTSSLITSVTLAPVEDSITSFTTTAGAATIVLEPTDTSS 682
           P D++S+  S  +   +DS   F T +G  + +L+P   SS
Sbjct: 602 PDDSASIAASKAIQSEDDSKVLFDTPSGMPSYMLDPVQVSS 642


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/73 (23%), Positives = 29/73 (39%)
 Frame = -3

Query: 693 EVINDEVSVGSKTIVAAPAVVVNDVIESSTGASVTEVINDEVSVGSKTIVAAPAVVVNDP 514
           E   DE+S  +K I+      +++ + S  G        DE+     T VAA    V D 
Sbjct: 135 ETQGDEISAKTKDIIDGGEKEMSEAVNSVEGGGAVNKNEDEIKTTMVTEVAAGEETVKDD 194

Query: 513 IESSTGASATEVI 475
             +S     ++ +
Sbjct: 195 NNNSNTVEGSDCV 207


>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
           At5g44890, At2g29240, At1g08740; similar to EST
           gb|N96641
          Length = 748

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 446 VLXLTNASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITS 589
           V  L  A S  +S++L   ++S+G   T++G+ +I   PT   SL  S
Sbjct: 185 VSALFRAKSAKSSLSLDVKKESLGKLKTSSGSKSIPSSPTSCYSLPNS 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,141,303
Number of Sequences: 28952
Number of extensions: 149593
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)