Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30325
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...   248   3e-68
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...   124   5e-31
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   9.9  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score =  248 bits (607), Expect = 3e-68
 Identities = 115/144 (79%), Positives = 124/144 (86%), Gaps = 3/144 (2%)
 Frame = +3

Query: 183 SDSELDVTGTEP-VDCSK--PKDDDNGEKKHEKPAYSYNALIMMAIRNSPEKRLTLNGIY 353
           SD +LDVTGT P +DCSK  P+ +   +K  EKP YSYNALIMMAIRNSPEKRLTLNGIY
Sbjct: 51  SDCDLDVTGTPPPLDCSKNSPEKESEEKKSKEKPPYSYNALIMMAIRNSPEKRLTLNGIY 110

Query: 354 EYIMTNFPYYRENRQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDASADDVFIGG 533
           EYIM NFPYYREN+QGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLD SA+DVFIGG
Sbjct: 111 EYIMRNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVFIGG 170

Query: 534 TTGKLRRRSALTGRARLACFKRPL 605
           TTGKLRRRS    R+RLA FKR +
Sbjct: 171 TTGKLRRRSTAASRSRLAAFKRTI 194


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score =  124 bits (300), Expect = 5e-31
 Identities = 55/98 (56%), Positives = 73/98 (74%)
 Frame = +3

Query: 264 HEKPAYSYNALIMMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQNSIRHNLSLNKC 443
           H KP YSY +LI MAI+NSP+K LTL+ IY++IM  FP+YR+N+Q WQNSIRH+LS N C
Sbjct: 138 HAKPPYSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDC 197

Query: 444 FVKVPRHYDDPGKGNYWMLDASADDVFIGGTTGKLRRR 557
           FVKVPR  D PGKG++W L   + ++F  G   + ++R
Sbjct: 198 FVKVPRTPDKPGKGSFWSLHPDSGNMFENGCYLRRQKR 235


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 450 KVPRHYDDPGKGNYWM 497
           ++  H + P KG++WM
Sbjct: 100 RIYMHPESPSKGSHWM 115


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
 Frame = +3

Query: 177 DLSDSELDVTGTEPVDCSKPKDDDNGEKKH-------EKPAYSYNALIMMAIRNSPEKRL 335
           DLS S L+    +  D  K K     +++            Y YNAL     +    + +
Sbjct: 157 DLSPSSLNGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSI 216

Query: 336 TLNGIYE 356
           T N +Y+
Sbjct: 217 TKNAVYQ 223


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 408 NSIRHNLSLNKCFVKVPRHYD 470
           N I+H ++L+K  VKV + ++
Sbjct: 228 NKIKHLVNLHKNLVKVAKDHN 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,825
Number of Sequences: 336
Number of extensions: 2036
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)