Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30325
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0954 - 24757417-24758214                                         28   8.5  
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949...    28   8.5  

>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 456 PRHYDDPGKGNYWMLDASADDVFIGGTTGKLRRRSALTGRARLA 587
           PRH+    +  YW L  S  +V IGG+T K R R +   RA +A
Sbjct: 74  PRHFCRACR-RYWTLGGSLRNVPIGGSTRK-RPRPSRPARAAVA 115


>03_02_0764 +
           10990220-10992410,10992809-10993616,10994734-10994968,
           10995028-10995169,10997365-10997444,10997636-10997776
          Length = 1198

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 234 PKDDDNGEKKHEKPAYSYNALI-MMAIRNSPEKRLTLNGIYEYIMTNFPYYRENRQGWQN 410
           P+D D+G++ H  P  S+ A + ++  R+ P +   ++ I+   +     +R++ +G  N
Sbjct: 579 PEDKDDGQRMH--PRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSN 636

Query: 411 S 413
           S
Sbjct: 637 S 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,920
Number of Sequences: 37544
Number of extensions: 245306
Number of successful extensions: 816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)