Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30324
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0346 - 17776871-17781445                                         33   0.29 
12_02_0343 - 17748882-17753396                                         33   0.29 

>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 658 NKFAIKIGDSHDEQYVLHKILVSLCI*VEVLLTRAINQSTYAIQNTCRFSKCIFHENFLH 479
           N F  ++G  HD  YV+H +L  L   +     R +N ST +  N     K I H + + 
Sbjct: 556 NGFFEQVGKEHDSPYVMHDLLHELATNISSHEIRCLNSSTLSSIN--EIPKSIRHMSIIV 613

Query: 478 NYVHV 464
           +  HV
Sbjct: 614 DNRHV 618


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 658 NKFAIKIGDSHDEQYVLHKILVSLCI*VEVLLTRAINQSTYAIQNTCRFSKCIFHENFLH 479
           N F  ++G  HD  YV+H +L  L   +     R +N ST +  N     K I H + + 
Sbjct: 557 NGFFEQVGKEHDSPYVMHDLLHELATNISSHEIRCLNSSTLSSIN--EIPKSIRHMSIIV 614

Query: 478 NYVHV 464
           +  HV
Sbjct: 615 DNRHV 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,347
Number of Sequences: 37544
Number of extensions: 213920
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)