Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30321
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 94  VPMVRAATSDKPISPQNS 41
           +PM ++ TSD P S QNS
Sbjct: 220 LPMWKSDTSDGPESHQNS 237


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 669 KYLIVSRFSS--SKILAGAFVDWFLAEGRAHRFPRILR 562
           KYL+ +   +  S ++    ++W     R HR P+++R
Sbjct: 298 KYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPQLIR 335


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 149 AGLANHTISNNSYLQSL 99
           + L+N+TI NN+Y + L
Sbjct: 316 SSLSNNTIHNNNYNKKL 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,543
Number of Sequences: 438
Number of extensions: 4709
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)