Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30319
         (362 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6RVP9 Cluster: Predicted protein; n=1; Botryotinia fuc...    32   2.7  
UniRef50_Q4JYP9 Cluster: Oligosaccharide repeat unit polymerase ...    31   4.8  
UniRef50_Q2GDU6 Cluster: Magnesium transporter; n=1; Neoricketts...    31   6.3  
UniRef50_A0U7F2 Cluster: Transcriptional regulator, LysR family;...    31   8.3  

>UniRef50_A6RVP9 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 116

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 287 IPFLACMLLALTCLILFLSFIHHLTFLAGW 198
           +P+++CM ++L+  I   S +HHL  LA W
Sbjct: 16  VPWISCMSVSLSSSIALASSVHHLEDLATW 45


>UniRef50_Q4JYP9 Cluster: Oligosaccharide repeat unit polymerase
           Wzy; n=1; Streptococcus pneumoniae|Rep: Oligosaccharide
           repeat unit polymerase Wzy - Streptococcus pneumoniae
          Length = 362

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 328 HRLGRTLLFYVTHSYHFSLVCFSH*HASYYFFLSSITLLS 209
           + +G++ L++  H+Y+F    FSH   S+  FL+ I L S
Sbjct: 56  YAVGKSSLYFSDHAYNFFADWFSHHSISFQVFLACIFLFS 95


>UniRef50_Q2GDU6 Cluster: Magnesium transporter; n=1; Neorickettsia
           sennetsu str. Miyayama|Rep: Magnesium transporter -
           Neorickettsia sennetsu (strain Miyayama)
          Length = 437

 Score = 31.1 bits (67), Expect = 6.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 11  PAYFCREAVIRFGLKGGAAVVTILRVKQKINVLTPRLQ*TVTYVVKLFPQEI 166
           P    R  V   G++G A ++T L V + ++VL    Q  V  +VK FP ++
Sbjct: 59  PTELLRRIVETVGVRGFAQIITSLPVDEIVDVLEEIEQDFVKEIVKFFPSKL 110


>UniRef50_A0U7F2 Cluster: Transcriptional regulator, LysR family;
           n=3; Burkholderia cenocepacia|Rep: Transcriptional
           regulator, LysR family - Burkholderia cenocepacia MC0-3
          Length = 419

 Score = 30.7 bits (66), Expect = 8.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 150 NLTTYVTVYCNRGVSTLIFCLTLSIVTTAAP 58
           +LT   T+ CN G +T      L IVTTAAP
Sbjct: 215 SLTQTFTIRCNEGFATEFGAKLLDIVTTAAP 245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,674,482
Number of Sequences: 1657284
Number of extensions: 4843673
Number of successful extensions: 11597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11595
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 12794443530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)