Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30319
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   2.7  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    24   6.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.3  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 278 LACMLLALTCLILFLSFIHHLTFLAGWDSRYF 183
           + C LLA+  L++FLS I  L    GW S  F
Sbjct: 115 IICFLLAIDVLVVFLSPI--LRHREGWRSNAF 144


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 129 VYCNRGVSTLIFCLTLS 79
           +YC   V+++IFC++L+
Sbjct: 210 IYCFENVNSIIFCVSLN 226


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 302 LCNTF-IPFLACMLLALTCLILFLSFIHHLTFLAGWDSRYFDY 177
           +CNT  +  L C L+ L       SF+HH  + AG+   Y+ Y
Sbjct: 205 VCNTILVSDLPCKLIDLHND----SFLHHSNYYAGFGLSYYLY 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,613
Number of Sequences: 5004
Number of extensions: 20730
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)