Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30319
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         27   4.5  
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896...    27   6.0  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 81  SIVTTAAPPFKPKRITA 31
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>07_01_1034 -
           8962703-8962748,8962831-8962991,8963068-8963905,
           8963991-8964128,8964206-8964355,8964436-8964683,
           8964825-8964953,8965735-8965960,8966909-8966975,
           8967488-8967551,8968902-8969000,8969074-8969157,
           8969240-8969321,8969412-8969460,8969664-8969769,
           8970650-8970734,8970814-8970917,8970994-8971109,
           8971187-8971373,8972005-8972113,8972633-8972761,
           8973365-8973449,8973812-8973947,8974078-8974230,
           8974488-8974634,8974801-8974941,8975580-8975903
          Length = 1400

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 335 PRP*ARQDLIILCNTFIPFL 276
           P+P  RQDL I  N F+PF+
Sbjct: 825 PQPLGRQDLQINSNDFLPFI 844


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,594,963
Number of Sequences: 37544
Number of extensions: 131179
Number of successful extensions: 256
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)