Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30319
         (362 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)                     30   0.49 
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            27   6.0  

>SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)
          Length = 784

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -3

Query: 315 GPYYSM*HIHTISRLYASRTDMPHTISFFHPSPYFLSRVGLAXXXXXXXXXSWGNNLTTY 136
           GPYY      +I R+Y++     HT S  HP PY+      +           G +  + 
Sbjct: 181 GPYYRYTAPRSILRVYSTPV---HTTSIQHPGPYYQYTAPRSILPVYSIPVHTGIHTQSI 237

Query: 135 VTVYC 121
           + VYC
Sbjct: 238 LVVYC 242



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 315 GPYYSM*HIHTISRLYASRTDMPHTISFFHPSPYF 211
           GPYY      +I  +Y++     HT S  HP PY+
Sbjct: 116 GPYYRYTAPRSILPVYSTPV---HTTSIQHPGPYY 147


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 308 IILCNT--FIPFLACMLLALTCLILFLSFIHHLTFLA 204
           I+LC    F P + C L   TC++L       + FL+
Sbjct: 51  IVLCQLQLFTPIVLCQLQLFTCIVLCQQLFTRVLFLS 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,774,975
Number of Sequences: 59808
Number of extensions: 154640
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)