Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30319
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81524-5|CAB04253.2|  283|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    26   9.3  

>Z81524-5|CAB04253.2|  283|Caenorhabditis elegans Hypothetical
           protein F32H5.5 protein.
          Length = 283

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 153 NNLTTYVTVYCNRGVSTLIFCLTLSIVTT 67
           N  +TY+ + C+  +  ++FC T  + T+
Sbjct: 238 NLASTYIIIICDSNLRKILFCHTKKLTTS 266


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 295 THSYHFSLVCFSH*HASYYFFLSSITLLS 209
           T    F+L+CFS    ++Y  LSS    S
Sbjct: 45  TERTSFNLICFSRAFVNFYILLSSFLFYS 73


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 26   REAVIRFGLKGGAAVVTILRVKQKINV 106
            R A++ FG+ G   VVT  RV Q +NV
Sbjct: 1186 RSAIVSFGITGTKTVVTTERVSQ-LNV 1211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,264,028
Number of Sequences: 27780
Number of extensions: 118793
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)