Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30319
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    20   7.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    20   7.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    20   7.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    20   7.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.8  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 90  NKKLMY*HHGYNKRSHT*LNY 152
           N K  Y ++ YNK+ +  +NY
Sbjct: 94  NYKYNYNNNNYNKKLYYNINY 114


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 90  NKKLMY*HHGYNKRSHT*LNY 152
           N K  Y ++ YNK+ +  +NY
Sbjct: 94  NYKYNYNNNNYNKKLYYNINY 114


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 90  NKKLMY*HHGYNKRSHT*LNY 152
           N K  Y ++ YNK+ +  +NY
Sbjct: 94  NYKYNYNNNNYNKKLYYNINY 114


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 90  NKKLMY*HHGYNKRSHT*LNY 152
           N K  Y ++ YNK+ +  +NY
Sbjct: 94  NYKYNYNNNNYNKKLYYNINY 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 100 NFLFNSQYSYNGCPTLQTETYY 35
           +F+ N ++   G P  + E YY
Sbjct: 190 SFITNGEWDLLGVPGKRNEIYY 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,470
Number of Sequences: 438
Number of extensions: 1680
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)