Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30318
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    28   1.6  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   6.4  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   6.4  

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -1

Query: 544 AVGGPPXNQPSPSEHLHSXHTXDPLDIF-NKKENTRRITIKIPGLFSIHKQ*DKSGVDRR 368
           A  GPP ++  PS  + S    +P  I   KK N+   T K P + S  +  + S   R+
Sbjct: 229 AWNGPPIDKSLPSSEMDSNLQTNPSSISKGKKNNSNNTTQKGPNIISSPQVINASSPVRK 288

Query: 367 EHTKRT 350
              K++
Sbjct: 289 AGKKKS 294


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 357 FVCSRLSTPDLSHCLCMENXPGIFM 431
           F  S+L  PDL+H   + N  G+F+
Sbjct: 191 FAQSKLEDPDLAHSQAISNSLGLFL 215


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 270 KIILSFYFYSVISVERCNRS 329
           +I    YFY ++  E+CNRS
Sbjct: 167 QIAAKLYFYYILFFEKCNRS 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,260
Number of Sequences: 5004
Number of extensions: 53020
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)