Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    43   0.009
UniRef50_Q2GVE3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 42.7 bits (96), Expect = 0.009
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +2

Query: 503 SLATKSSASELTHRYSPLSFSPDLLGGSCFRSGERF 610
           SL T   ++E  HR  PLSFSPDLL GS FR+G  +
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q2GVE3 Cluster: Putative uncharacterized protein; n=1;
            Chaetomium globosum|Rep: Putative uncharacterized protein
            - Chaetomium globosum (Soil fungus)
          Length = 1532

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 19/73 (26%), Positives = 26/73 (35%)
 Frame = +2

Query: 392  PRRPKHVIMNPPDPXXXXXXXXXFSNHKYRSPSSSNPSLATKSSASELTHRYSPLSFSPD 571
            P RP  V+  PP P         F  H  + P         +  +S    +Y P +  P 
Sbjct: 1011 PSRPSQVVSRPPQPTFHNHV---FHQHPQQHPEQQRMQHHMQQQSSLQVKQYQPPASDPQ 1067

Query: 572  LLGGSCFRSGERF 610
              G S   S +RF
Sbjct: 1068 RKGSSALYSPDRF 1080


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,493,183
Number of Sequences: 1657284
Number of extensions: 13756960
Number of successful extensions: 30162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30142
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)