Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.8  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.6  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 464 SNHKYRSPSSSNPSLATKSSASELTHRYSPLSFSPDLLGGS 586
           SN  +   +  +PS+   SS      R+SP S   DLL G+
Sbjct: 14  SNEFFGETTMVSPSIDVSSSPRPNVERFSPCSTKKDLLEGN 54


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 105 SVVKLMPNPCAAR*DNSTSTPQNEIRSRRKIRRYAPVQADNTAVIPQICKLLFFF 269
           +V KL    C  R DN  S   N  R   +++RY+      ++++P++  LL FF
Sbjct: 604 AVQKLGGLQCIIRNDN-LSHIFNCSRKYIRVQRYSDDDLSESSLLPRLVNLLLFF 657


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 488 SSSNPS-LATKSSASELTHRYSPLSFSPDLL 577
           S+S+PS + + SS S   + Y+PL FS DLL
Sbjct: 382 SASSPSYVPSGSSFSVRANLYNPLDFSIDLL 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,245
Number of Sequences: 5004
Number of extensions: 58389
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)