Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666...    31   0.74 
01_03_0022 + 11724319-11725381,11725476-11725582                       28   6.9  
01_01_0060 + 477667-477816,479312-479722                               28   6.9  
08_01_0979 + 9847008-9847093,9848148-9848682                           28   9.1  
03_05_0324 - 23121401-23121465,23121507-23122059                       28   9.1  

>03_02_0236 +
           6666104-6666202,6666530-6666832,6667476-6667550,
           6668329-6668367,6668905-6668923,6669796-6669852,
           6670432-6670559,6670644-6670712,6671116-6671201,
           6671285-6671394,6672060-6672110,6672602-6672660,
           6672953-6672997,6673132-6673206,6673314-6673430
          Length = 443

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 238 FRKFVNSCFFFLFAK*ICNYLGEIVLRFKYRHGQYEYIEG 357
           + K +  CF  LF   +  Y   ++L  K +HGQ E+ +G
Sbjct: 106 YYKILGKCFLILFVTSVLVYYVWLLLLIKLQHGQLEHADG 145


>01_03_0022 + 11724319-11725381,11725476-11725582
          Length = 389

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 482 SPSSSNPSLATKSSASELTHR 544
           +PSSS+P  AT+S +SE T R
Sbjct: 218 TPSSSSPDTATQSESSETTQR 238


>01_01_0060 + 477667-477816,479312-479722
          Length = 186

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 467 NHKYRSPSSSNPSLATKSSASELTHRYSPLSFSPDLLG 580
           +H Y + SSS+P  +TK + ++L H     ++   L G
Sbjct: 34  HHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQLKG 71


>08_01_0979 + 9847008-9847093,9848148-9848682
          Length = 206

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 651 SVADTSPSKSRALQNLSPDRKHDPPRRSGEKLSGLYLWVNSLA 523
           + A +SP   RA    S  RK D  RR  E    +Y W   L+
Sbjct: 3   AAAPSSPLDLRAAMGASSSRKADTARRDMESREWMYHWPRFLS 45


>03_05_0324 - 23121401-23121465,23121507-23122059
          Length = 205

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 663 AQTGSVADTSPSKS-RALQNLSPDRKHDPPRRSGE 562
           A+ G+   + P K   A ++  PD+KH+P R + E
Sbjct: 112 AENGTSTTSGPEKDPNAAKSCPPDKKHEPTRITSE 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,524
Number of Sequences: 37544
Number of extensions: 379777
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)