Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12439| Best HMM Match : Transthyretin (HMM E-Value=7.7)             30   1.7  
SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)                  29   3.0  
SB_44360| Best HMM Match : Ion_trans (HMM E-Value=1.99993e-41)         29   3.0  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     29   5.3  
SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)          28   7.0  

>SB_12439| Best HMM Match : Transthyretin (HMM E-Value=7.7)
          Length = 219

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/70 (32%), Positives = 32/70 (45%)
 Frame = +3

Query: 3   ETRKRNKNDSTTITRCTGCTNEYMAQGV*TSAWWSVVKLMPNPCAAR*DNSTSTPQNEIR 182
           E +KR +N STT T     T+   A    +S   ++  +   P        T+ P+N IR
Sbjct: 81  ENKKRKENLSTTTTN----TSPTAATTTASSPVTTMESITKGPQET--STLTAVPKNSIR 134

Query: 183 SRRKIRRYAP 212
            RR I  YAP
Sbjct: 135 HRRSISTYAP 144


>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 470 HKYRSPSSSNPSLATKSSASELTHRYSPLSFSPDLLGGSCFRS 598
           H+  +P  S+ +  T S + ELTH  SP   S + L    FRS
Sbjct: 224 HRVPNPGESHEAEETSSESFELTHENSPRHISVEDLPKGRFRS 266


>SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)
          Length = 415

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = -2

Query: 633 PSKSRALQNLSP-----DRKHDPPRRSGEKLSGLYLWV-----NSLAELFVASDGFDED 487
           PS++R L  +S      D+K D   +  +KL G+Y  +     N + E F+  +G D+D
Sbjct: 315 PSRTRYLSEISENNRAYDKKVDAQEKVAQKLYGIYQTILSVIPNEVTESFLTKNGIDQD 373


>SB_44360| Best HMM Match : Ion_trans (HMM E-Value=1.99993e-41)
          Length = 373

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -2

Query: 381 LSRPKILKTLYVLVLTVPVFKS*DYFS*IITYLFSK*EKKTRVYKFAELLRYYQLERVHT 202
           LS P+I+  L  ++ T+ +     Y+  +++  F         Y+F E+ R  Q+ R+  
Sbjct: 132 LSAPRIVPFLKSIMNTIDLLAILPYYFELLSLAFDN----QLDYRFVEMRRILQILRILR 187

Query: 201 ALFFFLTLSHSVGL 160
            +  F    HSVGL
Sbjct: 188 IVRIFKMARHSVGL 201


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 636 SPSKSRALQNLSPDRKHDPPRRS 568
           SP + R LQN+SP R+   P+RS
Sbjct: 431 SPFQPRVLQNISPQRQFASPQRS 453


>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
          Length = 846

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 DNSTSTPQNEIRSRRKIRRYAPVQADNTAVIPQICKLLFFFL 272
           +NST  PQ        IR+Y+  Q +N+ VIPQ    L  F+
Sbjct: 209 NNSTVIPQQSPALVGFIRQYSKDQVNNSTVIPQQSPALVGFI 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,715,809
Number of Sequences: 59808
Number of extensions: 438073
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)