Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    28   6.1  
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    28   6.1  
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      28   8.1  
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    28   8.1  

>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +2

Query: 482 SPSSSNPSLATKSSASELTHRYSPLSFSPDLLGGSCFRSG 601
           S  S+  SL   SSAS  T    PLSF     GGS   SG
Sbjct: 311 SALSTAASLFGSSSASTTTTATQPLSFGSSSTGGSSLFSG 350


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +2

Query: 482 SPSSSNPSLATKSSASELTHRYSPLSFSPDLLGGSCFRSG 601
           S  S+  SL   SSAS  T    PLSF     GGS   SG
Sbjct: 326 SALSTAASLFGSSSASTTTTATQPLSFGSSSTGGSSLFSG 365


>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 572 DPARNSVGCIYGLIHSPNSSSQATGSTRTVTGTCDC*KL 456
           DP   +  C+Y     P    Q T STRT+   C C KL
Sbjct: 309 DPTDTNDDCMYSF-DKPQKRLQETVSTRTMCVGCGCPKL 346


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -3

Query: 572 DPARNSVGCIYGLIHSPNSSSQATGSTRTVTGTCDC*KL 456
           DP   +  C+Y     P    Q T STRT+   C C KL
Sbjct: 309 DPTDTNDDCMYSF-DKPQKRLQETVSTRTMCVGCGCPKL 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,269
Number of Sequences: 27780
Number of extensions: 327298
Number of successful extensions: 735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)