Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 423 GFIMTCLGRRGQSRLSRPKILKTLYVLVLTV 331
           GF+MT L R GQS +    +L  + V V  +
Sbjct: 67  GFLMTFLRRYGQSAVGLTFLLGAILVQVAII 97


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 410  VIMNPPDPXXXXXXXXXFSNHKYRSPSSSNPS 505
            +  +PP P         F N  YR  SSSNPS
Sbjct: 1025 ITWSPPLPELRHGDIQGF-NVGYRETSSSNPS 1055


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 410  VIMNPPDPXXXXXXXXXFSNHKYRSPSSSNPS 505
            +  +PP P         F N  YR  SSSNPS
Sbjct: 1021 ITWSPPLPELRHGDIQGF-NVGYRETSSSNPS 1051


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 444 STVNGSGGFIMTCLGRRGQ 388
           ST+ GSGG  +  L +RGQ
Sbjct: 728 STLEGSGGDSLRTLLQRGQ 746


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = +2

Query: 497 NPSLATKSSASELTHRYSPLSFSPDLLGGSCFRSGERFCKARLLLGLVSATLPV*AP*AH 676
           +PS    S       R+   + S + L  S    G RF  + L+ G     LP+      
Sbjct: 393 HPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLHTECED 452

Query: 677 LHVKGDAEI 703
           L V G+A I
Sbjct: 453 LSVSGEAGI 461


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 19/69 (27%), Positives = 27/69 (39%)
 Frame = +2

Query: 497 NPSLATKSSASELTHRYSPLSFSPDLLGGSCFRSGERFCKARLLLGLVSATLPV*AP*AH 676
           +PS    S       R+   + S + L  S    G RF  + L+ G     LP+      
Sbjct: 393 HPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLHTECED 452

Query: 677 LHVKGDAEI 703
           L V G+A I
Sbjct: 453 LSVSGEAGI 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,260
Number of Sequences: 438
Number of extensions: 4185
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)