Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30315
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60730.1 68416.m06794 pectinesterase family protein contains ...    28   7.6  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    28   7.6  
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein...    27   10.0 
At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containi...    27   10.0 

>At3g60730.1 68416.m06794 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 519

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = -2

Query: 669 HGAQTGSVADTSPSKSRALQNLSPDRKHDPPRRSGEKLSGLYLW--VNSLAELFVASDG 499
           HG        T P       N  P R H  P R  +    L  W   +S A+  VA DG
Sbjct: 154 HGPARQGHGPTRPKHRPTRPNHGPGRSHHGPSRPNQNGGMLVSWNPTSSRADFVVARDG 212


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 464 SNHKYRSPSSSNPSLATKSSASELTHRYSPLSFSPDLL 577
           S+ KY S +SSNP      S+S +     PL  SP+ +
Sbjct: 407 SSRKYYSSASSNPVEDRSPSSSPVMQELFPLQASPETM 444


>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
           salt-tolerance protein - Arabidopsis thaliana,
           PID:e224078
          Length = 242

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 3   ETRKRNKNDSTTITRCTGCTNEYMAQGV*TSAWWSVVKLMPNPCAAR*DNSTSTPQNEIR 182
           E    + +DS + + CTG  +EY+ +   T   W V  L+ +P     +++  T  N   
Sbjct: 163 EENYHHVSDSGSGSGCTGSISEYLME---TLPGWRVEDLLEHPSCVSYEDNIITNNNNSE 219

Query: 183 SRR 191
           S R
Sbjct: 220 SYR 222


>At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 822

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +2

Query: 374 LDKRLCPRRPKHVIMNP-PDPXXXXXXXXXFSNHKYRSPSSSNPSLATKSSASELTHRYS 550
           +D  L P +P + I +  P P         FS+     P  S PS    S    L H  S
Sbjct: 1   MDGALFPHKPPYPIQSKRPPPSQSSNQSIKFSSATLHLPPPSPPSFPLDSLLHHLVHLSS 60

Query: 551 P 553
           P
Sbjct: 61  P 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,472
Number of Sequences: 28952
Number of extensions: 307380
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)