Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30314
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...   252   2e-67
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    43   2e-04
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    38   0.006
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    38   0.006
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    38   0.006
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    36   0.019
Z68004-5|CAA91986.1|  114|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    28   6.7  
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    28   6.7  

>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score =  252 bits (617), Expect = 2e-67
 Identities = 117/161 (72%), Positives = 140/161 (86%), Gaps = 1/161 (0%)
 Frame = +2

Query: 173 EERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVT 352
           E  +G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD ATIQVYEETSGVT
Sbjct: 4   ESSYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGVT 63

Query: 353 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 532
           +GDPVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQSIYIPKG++  +L+RE  W+
Sbjct: 64  IGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREARWD 123

Query: 533 F-NPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGT 652
           F    +++VG H+TGGD+ G V EN L+KH++L+PP A GT
Sbjct: 124 FVVSKDLRVGGHVTGGDIIGTVDENLLIKHKILLPPSACGT 164


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
 Frame = +2

Query: 155 IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMAT 319
           I N     R  Y  V  V+GP+V    +      E+V++     ++  G+++ +  + A 
Sbjct: 18  IRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAV 77

Query: 320 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 448
           +QV+E TSG+   + +   TG  L   +   +LG IF+G  +P+
Sbjct: 78  VQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPI 121


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +2

Query: 170 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 349
           N E  G V ++   +     +      E+V    + + G  + L+ D   + V+     +
Sbjct: 25  NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 83

Query: 350 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 448
             GD V RTG  + V +G G+LG + D +  P+
Sbjct: 84  REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +2

Query: 170 NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 349
           N E  G V ++   +     +      E+V    + + G  + L+ D   + V+     +
Sbjct: 52  NLEETGKVLSIGDGIARVYGLKNIQAEEMVEFD-SGIKGMAMNLDVDNVGVVVFGNDKVI 110

Query: 350 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 448
             GD V RTG  + V +G G+LG + D +  P+
Sbjct: 111 REGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
 Frame = +2

Query: 155 IANEENEERFGY--VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMAT 319
           I N   + +  Y  VF V+GP+V    +      E+V++        +G+++    + A 
Sbjct: 30  IQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAV 89

Query: 320 IQVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL 448
           +QV+E T+GV         TG      +   +LG IF+G  +P+
Sbjct: 90  VQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPI 133


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
 Frame = +2

Query: 185 GYVFAVSGPVVTAE--KMSGSAMYELVRVGYN-ELVGEIIRLEGD-MATIQVYEETSGVT 352
           G + AV G VV  +  +     +  L  VG +  L+ E+ +  GD +      + T G+ 
Sbjct: 70  GRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLV 129

Query: 353 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR-EVDW 529
            G PV  TG P+ + +GP  LG I + I  P+ +   +    +       P      V+ 
Sbjct: 130 RGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQ 189

Query: 530 EFNPLNVKV 556
           E     +KV
Sbjct: 190 EILVTGIKV 198


>Z68004-5|CAA91986.1|  114|Caenorhabditis elegans Hypothetical
           protein F47B10.6 protein.
          Length = 114

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -3

Query: 189 YPNLSSFSSLAIVLKPPLLAILN 121
           Y N+ +F S+++ LKP L+AI+N
Sbjct: 92  YINIINFHSISLYLKPKLIAIIN 114


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 429 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 316
           + +E  IP PS  D      S GS   TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -2

Query: 331 VYLD----GGHVTFKTDNLTDEFIVTDTDQLVHSRSGHF 227
           VY+D     G + +  DN T EF+  DTD  V     H+
Sbjct: 283 VYMDRVSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNHY 321


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 429 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 316
           + +E  IP PS  D      S GS   TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,682
Number of Sequences: 27780
Number of extensions: 309246
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)