Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30313
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.2  
SPAC6F12.04 |||COPI-coated vesicle associated protein |Schizosac...    26   3.2  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   9.6  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   9.6  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   9.6  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 182 FWLGTVLHGIYADNFW 229
           FW+  VL G+Y  N+W
Sbjct: 357 FWIWIVLPGLYYQNYW 372


>SPAC6F12.04 |||COPI-coated vesicle associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 201 FMGFTQITSGISYCQXTIISGIR 269
           F+GF  + +GI+YC    ++G++
Sbjct: 91  FLGFLVLLAGIAYCGANYVAGLQ 113


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 211 NPMKYGTEPKIRPSSAFFKS 152
           N MKYG E + RP+  +F+S
Sbjct: 679 NIMKYGDEIRSRPARTWFQS 698


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 244 WQYEMPEVICVNPM 203
           WQ E+P+++C +PM
Sbjct: 131 WQPEVPDMVCHDPM 144


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 344 AXYAVSKLNLPRYAEPF 394
           A Y+VS LN+P Y +P+
Sbjct: 338 AGYSVSDLNIPGYKQPW 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,099
Number of Sequences: 5004
Number of extensions: 39730
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)