Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30313
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0295 + 17006064-17007063,17007068-17007666                       28   4.2  
01_06_1256 - 35775149-35775590,35775782-35775840                       28   4.2  
12_02_0291 + 16951154-16952740                                         27   7.4  

>12_02_0295 + 17006064-17007063,17007068-17007666
          Length = 532

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +2

Query: 26  SMETWLDWXVRKNDXKQLWAAQPTYIISQAVYVLAGLLTLXHAF 157
           S+ETW+ +         LW+  P ++  +A Y+++ L+ +  ++
Sbjct: 3   SVETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSLVPMAMSY 46


>01_06_1256 - 35775149-35775590,35775782-35775840
          Length = 166

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 407 PSPPRKAPRNVEDSALRLHT 348
           P PP++  +N ED AL LHT
Sbjct: 8   PFPPKRKRQNGEDGALHLHT 27


>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 26  SMETWLDWXVRKNDXKQLWAAQPTYIISQAVYVLAGLLTL 145
           S+ETW+ +         LW+  P ++  +A Y+++ L+ +
Sbjct: 3   SVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPM 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,675
Number of Sequences: 37544
Number of extensions: 254396
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)